H2S HEMOGLOBIN I STRUCTURE--SITE DIRECTED MUTAGENESIS STUDY
H2S HEMOGLOBIN I STRUCTURE--SITE DIRECTED MUTAGENESIS STUDY
批准号:
6311579
负责人:
JUAN LOPEZ-GARRIGA
金额:
$5.66万
依托单位国家:
美国
项目类别:
财政年份:
2000
资助国家:
美国
项目状态:
已结题
起止时间:
2000-05-01 至 2001-04-30
关键词:
Bivalvia Raman spectrometry anaerobic bacteria binding sites conformation denaturing gradient gel electrophoresis hemoglobin hemoprotein biosynthesis host organism interaction hydrogen bond hydrogen sulfide infrared spectrometry interferometry ligands molecular cloning northern blottings nucleic acid hybridization protein structure function site directed mutagenesis
中文摘要
果胶绿藻的血红蛋白I可能是唯一一种在硫化氢结合亚铁状态和二氧结合亚铁状态下执行其功能的血红素蛋白。一种提出的机制表明,HBL与H_2S反应形成血红素铁硫化物低自旋络合物,将H_2S输送到细菌共生体。据信,硫化氢在亚铁蛋白形成时通过电子转移从一种未知的还原剂释放到细菌。此外,血红素-Fe/+3SH2部分与GInE7之间存在氢键,从而稳定了HbISH2中心。同样,PheB10和PheE11残基与HbICO、HbIO2和HBICN中心之间的极性相互作用也是如此。这一假设认为,HBL可能具有两种不同的配基稳定机制:一种是针对HBL-SH2中心,另一种是针对HbICO、HBIO2和HbICN部分。这里提出的工作旨在揭示附近氨基酸与HbISH2、HbIO2、HbICO和HbICN部分之间的相互作用。将使用定点突变方法。选择HBL在E7、B10和E11位的定点突变体,以及与共振和FTIR振动光谱耦合的配体的同位素标记,将阐明HBL-配体双重稳定的机制和结构。我们计划解决控制HBL结合、运输和传递硫化氢的因素。目前,关于血红素蛋白中观察到的配体亲和力差异是由静电效应、空间位阻限制还是氢键差异引起的,存在着激烈的争论和讨论。从广义上讲,HBL为解决这些问题提供了真正的优势,因为在这里,铁和亚铁一样,蛋白质具有重要的、独特的和可逆的生物学功能。该项目的一个长期目标是阐明好氧果胶绿藻与未知厌氧细菌之间的共生相互作用和交流。
英文摘要
Hemoglobin I from Lucina pectinata is probably the only heme protein that carries out its function in the hydrogen-sulfide bound ferric state and in the dioxygen bound ferrous state. A proposed mechanism suggests that Hbl reacts with H2S to form a heme ferric sulfide low spin complex to transport the H2S to a bacteria symbion. Hydrogen sulfide is believed to be released to the bacteria upon formation of the ferrous protein by electron transfer from a still unknown reductant. Furthermore, the presence of H-bonding between the heme-Fe/+3 SH2 moiety and GInE7 is postulated to stabilize the HbISH2 center. Likewise, polar interactions between the PheB10 and PheE11 residues and the HbICO, HbIO2, and HBICN centers, respectively. This hypothesis is that Hbl may possesses two distinct ligand stabilization mechanism: one for the Hbl-SH2 center and the other for the HbICO, HBIO2, and HbICN moieties. The work proposed here is intended to unravel the interactions between the nearby amino acids and the HbISH2, HbIO2, HbICO, and HbICN moieties. A site-directed mutagenesis approach will be used. Choices of Hbl site-directed variants in the E7, B10, and E11 positions, and isotope labeling of ligands coupled to resonance and FTIR vibrational spectroscopies will clarify the Hbl-ligand dual stabilization mechanism and structure. We plan to address the factors that controls the binding, transport, and delivery of H2S by Hbl. Right now, there are intense arguments and discussions going on about whether the ligand affinity differences that are observed in heme proteins arise from electrostatic effects, from steric constraints, or from hydrogen-bonding differences. In the broad sense, Hbl offers a real advantage to address these issues as here the ferric, as well as the ferrous, protein is significant, unique and reversible when it carries its biological function. A long term goal of this project is to clarify the symbiotic interaction and communication between the aerobic Lucina pectinata and the unknown anaerobic bacteria.
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会议论文
RISE Enhancing Biomedical Sciences and Biomedical Engineering in Science and Tech
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批准号:8528620
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项目类别:
-
资助金额:$120.27万
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财政年份:2010
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
RISE Enhancing Biomedical Sciences and Biomedical Engineering in Science and Tech
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批准号:7935843
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项目类别:
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资助金额:$130.93万
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财政年份:2010
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
RISE Enhancing Biomedical Sciences and Biomedical Engineering in Science and Tech
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批准号:8306732
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项目类别:
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资助金额:$124.63万
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财政年份:2010
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
RISE Enhancing Biomedical Sciences and Biomedical Engineering in Science and Tech
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批准号:8118587
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项目类别:
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资助金额:$124.63万
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财政年份:2010
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
Unraveling the Reaction between Heme (FeIV=O) Moiety and H2S
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批准号:7284003
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项目类别:
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资助金额:$14.92万
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财政年份:2007
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
UPR COBRE: PROTEIN STRUCTURE FUNCTION & DYNAMICS: ADMINISTRATIVE CORE
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批准号:6981481
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项目类别:
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资助金额:$25.59万
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财政年份:2004
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
H2S HEMOGLOBIN I STRUCTURE--SITE DIRECTED MUTAGENESIS STUDY
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批准号:6591057
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项目类别:
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资助金额:$3.04万
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财政年份:2002
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
CENTER FOR RESEARCH IN PROTEIN STRUCTURE, FUNCTION AND D
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批准号:6530156
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项目类别:
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资助金额:$159.47万
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财政年份:2001
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
CENTER FOR RESEARCH IN PROTEIN STRUCTURE, FUNCTION AND D
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批准号:6411790
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项目类别:
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资助金额:$43.15万
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财政年份:2001
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
H2S HEMOGLOBIN I STRUCTURE--SITE DIRECTED MUTAGENESIS STUDY
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批准号:6449374
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项目类别:
-
资助金额:$3.04万
-
财政年份:2001
-
负责人:JUAN LOPEZ-GARRIGA
-
依托单位:
CENTER FOR RESEARCH IN PROTEIN STRUCTURE, FUNCTION AND D
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批准号:6654443
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项目类别:
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资助金额:$155.46万
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财政年份:2001
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
CENTER FOR RESEARCH IN PROTEIN STRUCTURE, FUNCTION AND D
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批准号:6569975
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项目类别:
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资助金额:$103.25万
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财政年份:2001
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
H2S HEMOGLOBIN I STRUCTURE--SITE DIRECTED MUTAGENESIS STUDY
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批准号:6347516
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项目类别:
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资助金额:$3.04万
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财政年份:2000
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负责人:JUAN LOPEZ-GARRIGA
-
依托单位:
H2S HEMOGLOBIN I STRUCTURE--SITE DIRECTED MUTAGENESIS STUDY
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批准号:6107144
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项目类别:
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资助金额:$5.66万
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财政年份:1999
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
HEME PROTEINS LIGAND DYNAMICS--THE CO POISON THRESHOLD
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批准号:6271558
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项目类别:
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资助金额:$6.41万
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财政年份:1998
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
HEME PROTEINS LIGAND DYNAMICS--THE CO POISON THRESHOLD
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批准号:6240036
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项目类别:
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资助金额:$7.08万
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财政年份:1997
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
HEME PROTEINS LIGAND DYNAMICS--THE CO POISON THRESHOLD
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批准号:5211646
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项目类别:
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资助金额:$0.0万
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财政年份:--
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:--
Unraveling the Reaction between Heme (FeIV=O) Moiety and H2S
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批准号:8065496
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项目类别:
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资助金额:$11.26万
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财政年份:--
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
HEME PROTEINS LIGAND DYNAMICS--THE CO POISON THRESHOLD
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批准号:3734286
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项目类别:
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资助金额:$0.0万
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财政年份:--
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
Unraveling the Reaction between Heme (FeIV=O) Moiety and H2S
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批准号:7625991
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项目类别:
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资助金额:$11.81万
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财政年份:--
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负责人:JUAN LOPEZ-GARRIGA
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依托单位:
海外基金