Active site amino acids of cAMP phosphodiesterase 3A

cAMP磷酸二酯酶3A的活性位点氨基酸

• 批准号: 6570526
• 负责人: Robert W Colman
• 金额: $ 20.93万
• 依托单位: TEMPLE UNIV OF THE COMMONWEALTH
• 依托单位国家: 美国
• 财政年份: 2002
• 资助国家: 美国
• 起止时间: 2002-02-01 至 2002-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6570526
• 关键词: 3'5' cyclic nucleotide phosphodiesterase; active sites; binding sites; cyclic AMP; cyclic GMP; drug screening /evaluation; enzyme inhibitors; enzyme mechanism; enzyme structure; laboratory mouse; monoclonal antibody; protein binding; site directed mutagenesis

An increase of intracellular cAMP and cGMP produces potent inhibition of all platelet functions. Cyclic GMP inhibits cyclic AMP phosphodiesterase (cGI-PDE, PDE3A) and hydrolyzes cAMP, lowering its intracellular concentration. Inhibitors function as potent anti-platelet agents. Currently, the two anti-platelet agents with proven efficacy are aspirin, which inhibits cyclooxygenase-dependent synthesis of thromboxane A2 )TXA2), and clopidogrel or ticlopidine, which blocks away the ability of ADP to inhibit stimulated adenyl cyclase adenyl cyclase. Controlled trials show that both aspirin and ticlopidine are indicated in the secondary prevention of primary prevention. NO, a potent inhibitor of platelets by stimulating guanylate cyclase, elevates cGMP, which, by inhibiting PDE2A, elevates cAMP. By blocking all activating pathways in platelets when cAMP is increased intracellularly, the potential of PDE3 inhibitors is to modulate coronary artery reocclussion. PDE inhibitors have shown promise in animal models and in coronary stents in patients. The immediate goal is to identify critical amino acids in the active site of PDE. This information can be used by pharmaceutical companies to design clinically useful inhibitors with fewer side effects than the current ones. We hypothesize that there are distinct amino acids that facilitate the catalytic reaction, which hydrolyzes cAMP, that form the substrate binding site and that bind essential metal cations. We further postulate that although the inhibitor binding site for cGMP may overlap with the substrate binding site, there are distinct amino acids which interact with this nucleotide. The specific aims of this grant to test this hypothesis are as follows (1) We will synthesize new cGMP-alkylating affinity reagents (8-BDP-TcGMP, 2-BDB-TcGMP, 2-BDB-TeA-3'5'MP and cGMPS-BDB), measure their incorporation, and test their ability to various concentrations to modulate hydrolysis of cAMP and the ability of cAMP, cGMP and AMP to protect against loss of inhibition. (2) We will identify, isolate and sequence the modified peptides labeled by these new cGMP affinity agents and those labeled by the cAMP affinity analog. The function of these residues will be evaluated in the modified enzyme by kinetics, substrate and metal binding. (3) Based on the results of Specific Aim 2, we will design and produce site-directed mutants to test our hypothesis that the amino acids responsible for cGMP binding in the active site of PDE3 differ from those interact with AMP. We will also continue to mutate conserved amino acids and evaluate their effect on enzyme kinetics, Km (cAMP binding), and Ki (cGMP binding), as well as the influence of metals such as Zn++ and Mn++. (4) Since no crystallographic domain based on homologies to other hydrolases in the structural database. A detailed description of PDE3A at the molecular level is important in understanding the role of platelets in hemostasis as well as in the rational design of inhibitors.

细胞内cAMP和cGMP的增加产生对所有血小板功能的有效抑制。环GMP抑制环AMP磷酸二酯酶（cGI-PDE，PDE 3A）并水解cAMP，降低其细胞内浓度。抑制剂作为有效的抗血小板剂发挥作用。目前，两种经证实有效的抗血小板剂是阿司匹林和氯吡格雷或噻氯匹定，阿司匹林抑制血栓烷A2）TXA 2）的环加氧酶依赖性合成，氯吡格雷或噻氯匹定阻断ADP抑制受刺激的腺苷酸环化酶腺苷酸环化酶的能力。对照试验表明，阿司匹林和噻氯匹定都适用于一级预防的二级预防。NO是一种通过刺激鸟苷酸环化酶而有效抑制血小板的抑制剂，其升高cGMP，cGMP通过抑制PDE 2A而升高cAMP。当细胞内cAMP增加时，通过阻断血小板中的所有活化途径，PDE 3抑制剂的潜力是调节冠状动脉再闭塞。PDE抑制剂在动物模型和患者冠状动脉支架中显示出前景。当前的目标是确定PDE活性位点中的关键氨基酸。这些信息可以被制药公司用来设计临床上有用的抑制剂，其副作用比目前的抑制剂少。我们假设，有不同的氨基酸，促进催化反应，水解cAMP，形成底物结合位点，并结合必需的金属阳离子。我们进一步假设，虽然cGMP的抑制剂结合位点可能与底物结合位点重叠，但有不同的氨基酸与该核苷酸相互作用。（1）我们将合成新的cGMP-烷基化亲和试剂（8-BDP-TcGMP、2-BDB-TcGMP、2-BDB-TeA-3 '5'MP和cGMPS-BDB），测量它们的掺入，并测试它们在不同浓度下调节cAMP水解的能力以及cAMP、cGMP和AMP防止抑制丧失的能力。(2)我们将鉴定、分离和测序这些新的cGMP亲和剂标记的修饰肽和cAMP亲和类似物标记的修饰肽。这些残基的功能将通过动力学、底物和金属结合在修饰的酶中进行评价。(3)基于特定目标2的结果，我们将设计和生产定点突变体来验证我们的假设，即负责PDE 3活性位点中cGMP结合的氨基酸不同于与AMP相互作用的氨基酸。我们还将继续突变保守氨基酸，并评估其对酶动力学、Km（cAMP结合）和Ki（cGMP结合）的影响，以及Zn++和Mn++等金属的影响。(4)因为在结构数据库中没有基于与其他水解酶的同源性的晶体结构域。PDE 3A在分子水平上的详细描述对于理解血小板在止血中的作用以及抑制剂的合理设计非常重要。