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MECHANISM OF E. COLI TERMINATION FACTOR RHO

大肠杆菌终止因子 RHO 的作用机制

基本信息

批准号：
6636361
负责人：
BARBARA L. STITT
金额：
$ 16.7万
依托单位：
TEMPLE UNIV OF THE COMMONWEALTH
依托单位国家：
美国
项目类别：
财政年份：
2000
资助国家：
美国
起止时间：
2000-04-01 至 2006-03-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/6636361
关键词：
Escherichia coli RNA binding protein active sites adenosinetriphosphatase bacterial RNA bacterial proteins enzyme mechanism enzyme model enzyme substrate complex protein engineering transcription factor transcription termination

项目摘要

Gene expression at the level of mRNA production is regulated both at the initiation and termination of transcription. Termination factor Rho is a homohexameric protein that releases newly synthesized RNA from Escherichia coli transcription complexes. Rhos is thought to act through ATP-fueled, 5'->3' travel along nascent RNA. This travel is achieved by coordination of the RNA-dependent ATPase activity of Rho with RNA binding and release. Upon the arrival of Rho at the transcribing RNA polymerase, its continued travel unwinds the RNA-DNA helix of the transcription bubble, which disrupts the ternary transcription complex. The goal of the proposed work is the understanding the mechanism of directional travel by Rho along RNA. A fungal-developed anti-biotic, bicyclomycin, kills Gram-negative bacteria through Rho inhibition. A model in which Rho rolls along RNA as it hydrolyzes ATP predicts that ATO hydrolysis in the circularly arrayed Rho subunits will be sequential and in a fixed order. This prediction will be tested by using rapid mix/chemical quench techniques to examine pre-steady-state ATP hydrolysis kinetics. Other features of the kinetic mechanism will also be characterized, including determination of ligand binding order. Evidence for catalytic cooperativity among the active sites of Rho will be pursued and the requirements for cooperativity characterized. The rolling model also predicts that when RNA is bound to Rho, an unbound 5' region is the signal to Rho for ATP hydrolysis. This prediction will be tested by creating situations in which Rho has more or fewer than the usual number of signal RNA molecules bound. Each of these situations predicts changes in the pattern of ATP hydrolysis by Rho. This pattern will be monitored using rapid mix/chemical quench techniques and a combination of nucleotide binding with isotope partitioning experiments. Variant forms of Rho with characterized defects in RNA binding interactions will be used to clarify which of the two types of RNA binding sites on Rho interacts with the RNA signal for ATP hydrolysis. The proposed work will test and characterize the rolling model for ATP- dependent directional travel by Rho along RNA, which is the key to its transcription termination activity. The results will provide a better understanding of how the energy of ATP hydrolysis can be transduced to movement.

在mRNA产生水平上的基因表达在转录的起始和终止时都受到调节。终止因子Rho是从大肠杆菌转录复合物释放新合成的RNA的同六聚体蛋白。Rhos被认为是通过ATP驱动的，沿着沿着新生RNA的5 '->3'行进而起作用的。这种旅行是通过Rho的RNA依赖性ATP酶活性与RNA结合和释放的协调来实现的。当Rho到达转录RNA聚合酶时，它的继续旅行解开了转录泡的RNA-DNA螺旋，这破坏了三元转录复合物。这项工作的目标是了解Rho沿着RNA定向旅行的机制。一种由真菌开发的抗生素双环霉素通过Rho抑制作用杀死革兰氏阴性菌。一个模型中，Rho沿着，因为它水解ATP预测ATO水解在环状排列的Rho亚基将是连续的，并在一个固定的顺序。该预测将通过使用快速混合/化学淬灭技术来检验预稳态ATP水解动力学。动力学机制的其他特征也将被表征，包括配体结合顺序的确定。证据之间的催化协同性的活性位点的Rho将追求和协同性的特点的要求。滚动模型还预测，当RNA与Rho结合时，未结合的5'区域是Rho进行ATP水解的信号。这个预测将通过创造Rho比通常结合的信号RNA分子数量更多或更少的情况来测试。这些情况中的每一种都预测了Rho对ATP水解模式的变化。将使用快速混合/化学淬灭技术以及核苷酸结合与同位素分配实验的组合来监测该模式。变体形式的Rho与特征缺陷的RNA结合相互作用将被用来澄清哪两种类型的RNA结合位点的Rho相互作用的RNA信号ATP水解。拟开展的工作将测试和表征Rho沿着RNA进行ATP依赖性定向旅行的滚动模型，这是其转录终止活性的关键。这一结果将有助于我们更好地理解ATP水解的能量是如何转化为运动的。