Assessing Effects of Genetics and Environment on Metabolism in S cerevisiae

评估遗传和环境对酿酒酵母代谢的影响

• 批准号: 7546846
• 负责人: Sara J Cooper
• 金额: $ 4.96万
• 依托单位: UNIVERSITY OF WASHINGTON
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-09-16 至 2011-09-15
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7546846
• 关键词: Affect; Animal Model; Automation; Biochemical Pathway; Biological Assay; Biological Process; Biology; Capillary Electrophoresis; Cell Cycle; Cell physiology; Cells; Cellular biology; Class; Code; Collection; DNA Resequencing; Data; Diabetes Mellitus; Diagnosis; Diagnostic Procedure; Disease; Environment; Facility Construction Funding Category; Gene Deletion; Genes; Genetic; Genetic Polymorphism; Genetic Variation; Goals; Health; Human; Human Biology; Malignant Neoplasms; Malignant neoplasm of kidney; Metabolic; Metabolic Pathway; Metabolism; Methods; Nutrient; Orthologous Gene; Pathway interactions; Phenotype; Process; Public Health; Range; Reagent; Renal carcinoma; Role; Saccharomyces cerevisiae; Single Nucleotide Polymorphism; Stimulus; Study models; Testing; Translating; Vitamins; Yeasts; base; clinical Diagnosis; cofactor; disorder prevention; improved; insight; interest; novel; novel diagnostics; research study; response; small molecule; technology development

DESCRIPTION (provided by applicant): Metabolism encompasses all the processes by which a cell generates energy and other essential molecules from nutrients. These pathways rely on hundreds of genes and involve thousands of small molecule intermediates, vitamins and cofactors. Small-scale analysis of metabolites is already a common practice for clinical diagnosis. Increased interest in small molecules has led to development of technologies that allow high-throughput profiling of metabolic intermediates. These methods have already led to new diagnostic techniques for kidney cancer. To further our understanding of the roles for small molecule metabolites, I have begun using capillary electrophoresis to profile metabolites in the yeast Saccharomyces cerevisiae. Yeast share all major metabolic pathways with humans and provide the advantages of a well-studied model organism. Based on the similarities, results in yeast can be easily translated to human biology. Preliminary studies demonstrate that this profiling method is simple, quantitative and easily amenable to automation. First, I will identify derivatization reagents that allow me to observe a wide variety of metabolites. Second, I will characterize yeast genes that affect the levels of cellular metabolites relevant to essential metabolic pathways. Third, I will profile metabolites during response to environmental stimuli and during cellular processes such as the cell cycle. Fourth, I will use yeast to determine how polymorphisms in human genes affect these pathways in human metabolism. These data will provide a clearer picture of the metabolic network in yeast and human, yielding insights into the biology of metabolic processes in human health and disease. PUBLIC HEALTH RELEVANCE: The basic processes of metabolism lie beneath every process of cell biology. By examining and understanding a cell's metabolic response to stimuli, we will gain insights into diverse biological processes. In addition, comparing normal cellular changes with the changes that occur during cells affected by cancer or diabetes provides a potentially novel mechanism for disease prevention and treatment.

描述(申请人提供)：新陈代谢包括细胞从营养物质中产生能量和其他基本分子的所有过程。这些途径依赖于数百个基因，涉及数千种小分子中间体、维生素和辅因子。对代谢产物进行小规模分析已经是临床诊断的一种常见做法。对小分子的兴趣增加导致了允许高通量分析代谢中间体的技术的发展。这些方法已经带来了肾癌的新诊断技术。为了进一步了解小分子代谢物的作用，我已经开始使用毛细管电泳法分析酿酒酵母中的代谢物。酵母与人类共享所有主要的代谢途径，并提供了经过充分研究的模式生物的优势。基于相似性，酵母中的结果可以很容易地转化为人类生物学。初步研究表明，该剖面法简单、定量、易于自动化。首先，我将确定衍生化试剂，使我能够观察到各种各样的代谢物。其次，我将描述酵母基因的特征，这些基因会影响与基本代谢途径相关的细胞代谢物水平。第三，我将在对环境刺激的反应和细胞过程中(如细胞周期)分析代谢物。第四，我将使用酵母来确定人类基因的多态如何影响人类新陈代谢的这些途径。这些数据将为酵母和人类的代谢网络提供更清晰的图景，从而深入了解人类健康和疾病中代谢过程的生物学。与公共卫生相关：新陈代谢的基本过程存在于细胞生物学的每一个过程之下。通过检查和理解细胞对刺激的新陈代谢反应，我们将对不同的生物过程有更深入的了解。此外，将正常细胞变化与受癌症或糖尿病影响的细胞期间发生的变化进行比较，为疾病预防和治疗提供了一种潜在的新机制。