ESTABLISHING A COMPUTING ENVIRONMENT FOR BIOINFORMATICS

建立生物信息学的计算环境

• 批准号: 7381495
• 负责人: STEPHEN ITOGA
• 金额: $ 5.85万
• 依托单位: UNIVERSITY OF HAWAII AT MANOA
• 依托单位国家: 美国
• 财政年份: 2006
• 资助国家: 美国
• 起止时间: 2006-05-01 至 2007-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7381495
• 关键词: ESTABLISHING; COMPUTING; ENVIRONMENT; BIOINFORMATICS

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. We have established a new dual computer system to manage the INBRE web services. This system will run under the Windows 2003 operating system and should improve the robustness of the previous web environment that ran under the Windows 2000 operating system. As part of our security improvements, we also have established a new test environment to check out future additions and changes to the INBRE web services. We have a 10 node high performance Dell Linux cluster purchased under the BRIN project up and running this spring in our facilities. This system was rescued from a flood that occurred in the Biomedical building on October 30, 2004. This 32 bit system is being used to run relatively small projects that can benefit from cluster technology. In January 2005 we purchased a 96 node high performance Dell Linux cluster using INBRE funds as well as other resources. This 64 bit environment consists of 192 processors in a three rack configuration. This system has a theoretical peak performance close to one teraflop. We hired Mr. Andreas Koga to be the system administrator for the INBRE computing environment. As such, he is in charge of managing all hardware, networking, and software systems. The new Dell Linux cluster is a shared facility that was purchased with INBRE, NSF, and University of Hawaii funds. As such it is open to use by all research in the University of Hawaii system. Currently we are working with six researchers and their graduate students to test out the system and to bring it online in an orderly fashion.

该子项目是利用NIH/NCRR资助的中心赠款提供的资源的许多研究子项目之一。子项目和研究者（PI）可能从另一个NIH来源获得主要资金，因此可以在其他CRISP条目中表示。所列机构为中心，不一定是研究者所在机构。我们建立了一个新的双计算机系统来管理INBRE网络服务。该系统将在Windows 2003操作系统下运行，应能改进以前在Windows 2000操作系统下运行的网络环境的稳健性。作为我们安全改进的一部分，我们还建立了一个新的测试环境，以检查未来对INBRE Web服务的添加和更改。 我们在BRIN项目下购买了一个10节点高性能Dell Linux集群，并于今年春天在我们的设施中运行。该系统于2004年10月30日从生物医学大楼发生的洪水中获救。这个32位系统用于运行相对较小的项目，这些项目可以从集群技术中受益。 2005年1月，我们使用INBRE基金和其他资源购买了一个96节点高性能Dell Linux群集。此64位环境由192个处理器组成，采用三机架配置。该系统的理论峰值性能接近1 teraflop。 我们聘请Andreas古贺先生担任INBRE计算环境的系统管理员。因此，他负责管理所有硬件、网络和软件系统。 新的Dell Linux群集是一个共享设施，由INBRE、NSF和夏威夷大学出资购买。因此，它是开放的夏威夷大学系统的所有研究使用。目前，我们正在与六名研究人员和他们的研究生一起测试该系统，并将其有序地上线。