Functional role of a host metabolic enzyme in viral replication

宿主代谢酶在病毒复制中的功能作用

• 批准号: 7640386
• 负责人: PETER NAGY
• 金额: $ 17万
• 依托单位: UNIVERSITY OF KENTUCKY
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-02-13 至 2011-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7640386
• 关键词: Affect; Agriculture; Animals; Antiviral Agents; Area; Binding; Biochemical; Biological Assay; Biological Models; Cataloging; Catalogs; Cell-Free System; Cells; Cellular biology; Complex; Data; Data Set; Dengue Virus; Development; Disease; Enzymes; Evolution; Flavivirus; Food; Genes; Genome; Glyceraldehyde-3-Phosphate Dehydrogenases; Health; Hepatitis A Virus; Hepatitis C virus; Human; In Vitro; Integration Host Factors; Knowledge; Lead; Life; Metabolic; Organism; Para-Influenza Virus Type 3; Pathogenesis; Pestivirus; Plants; Play; Production; Protein Binding; Proteins; Proteomics; RNA Virus Infections; RNA Viruses; RNA replication; RNA-Directed RNA Polymerase; Recruitment Activity; Research; Risk; Role; Social Welfare; Societies; System; Systems Biology; Tomatoes; Tombusvirus; Viral; Viral Pathogenesis; Viral Physiology; Virus; Virus Replication; West Nile virus; Work; Yeast Model System; Yeasts; base; genome wide association study; in vivo; insight; novel; novel strategies; pathogen; programs; public health relevance; replicase; research study; tomato bushy stunt virus; transcription factor; viral RNA; virus host interaction; yeast genetics

DESCRIPTION (provided by applicant): Plus-stranded (+)RNA viruses infect all kind of species and cause many serious diseases in humans, animals and plants, leading to major losses in food production and representing significant risk to human health and welfare. The least understood aspect of virus - host interaction is the contribution of the host cells. Due to their small genome sizes, RNA viruses greatly depend on the co-opted host proteins during replication. In spite of the significance of host proteins in viral pathogenesis, our current knowledge on host factors co- opted for virus replication is surprisingly incomplete. The relatively slow progress in this area is mainly due to the lack of tractable virus - host systems. Therefore, development of highly tractable model systems, such as Tomato bushy stunt tombusvirus (TBSV) and the yeast model host has promoted rapid and significant progress in our understanding of the roles of host factors in viral replication. The PI will use TBSV, which is currently one of the most advanced among viral systems to progress rapidly in understanding the mechanism of RNA replication and the role of the host proteins. Indeed, the PI's research, using a systems biology approach, including genome-wide screens and proteomics approaches, has led to a remarkably extensive data set containing close to 200 host proteins affecting tombusvirus replication, evolution and pathogenesis. Moreover, using novel cell-free system with a yeast extract capable of supporting authentic tombusvirus replication in combination with cell biology approach allows the PI to dissect the actual functions of the identified host proteins in tombusvirus replication. The PI has shown that the discoveries made in yeast are also relevant in the native host plant, thus validating the approach. These advances have put tombusviruses into the forefront of RNA viruses as a system of choice to further our understanding how RNA viruses "re-program" the infected cells. The PI's work will likely lead to major new insights into RNA virus replication and viral pathogenesis. Additional advantage of the similarity of TBSV replicase proteins to proteins of important pathogens, such as Hepatitis C virus (HCV), dengue virus, West Nile virus and other Flaviviruses and Pestiviruses. Collectively, the major advances with TBSV allow the PI to conduct experiments on the roles of host factors that are feasible with TBSV, and will stimulate development of new approaches for studying RNA replication and host - pathogen interactions for important human pathogens. This proposal focuses on a key host factor present in the viral replicase complex, namely GAPDH (glyceraldehyde-3-phosphate dehydrogenase) metabolic protein that binds to the viral RNA and essential for tombusvirus replication in yeast and in the native host plant. The proposed work will unravel the multiple functions of GAPDH in the viral replicase. These studies by the PI will certainly lead to further significant advances on the essential role of the host in RNA virus replication, evolution and virus-host interaction. Accordingly, GAPDH has been shown to bind to AU-rich sequences present in various RNA viruses, including hepatitis A virus (HAV), hepatitis C virus, and human parainfluenza virus type 3. The following are the major strengths of the proposal: (i) Viral RNA replication is clearly of immense importance for viruses to infect all types of living organisms. (ii) The combination of yeast and authentic cell-free assay developed by the PI is currently the most potent for studying the mechanism of host factors involvement in viral RNA replication. (iii) This research is expected to lead to groundbreaking new discoveries in viral RNA replication. The highly tractable in vitro and in vivo TBSV system developed by the PI could prove highly beneficial to studies of other, less amenable RNA viruses. The research holds promise of benefiting society by leading to groundbreaking results in the area of virus replication, host-virus interactions and the adaptation of viruses to their hosts. PUBLIC HEALTH RELEVANCE: RNA viruses, which pose significant risks to human health and cause major losses for agriculture, depend heavily on host factors to replicate in infected cells. The roles of the subverted host factors in virus replication are currently poorly understood due to the lack of tractable virus-host systems. The PI will use the powerful Tomato bushy stunt virus (TBSV)-yeast model system to dissect the role of a key co-opted host factor, namely GAPDH (glyceraldehyde-3-phosphate dehydrogenase) metabolic protein that binds to the viral RNA and essential for tombusvirus replication in yeast and in the native host plant. The proposed work will lead to deeper understanding of the role of the host in RNA virus infections and likely open new antiviral strategies.

描述（由申请方提供）：正链（+）RNA病毒感染所有种类的物种，并在人类、动物和植物中引起许多严重疾病，导致粮食生产的重大损失，并对人类健康和福祉构成重大风险。病毒与宿主相互作用中最不为人所知的是宿主细胞的作用.由于它们的基因组大小很小，RNA病毒在复制过程中极大地依赖于所选择的宿主蛋白。尽管宿主蛋白质在病毒发病机制中具有重要意义，但我们目前对病毒复制的宿主因子的认识令人惊讶地不完整。这一领域进展相对缓慢，主要是由于缺乏易处理的病毒宿主系统。因此，高度易处理的模型系统，如番茄丛矮病毒（TBSV）和酵母模型宿主的发展促进了我们对病毒复制中宿主因子作用的理解的快速和重大进展。PI将使用TBSV，这是目前最先进的病毒系统之一，以快速了解RNA复制的机制和宿主蛋白的作用。事实上，PI的研究，使用系统生物学方法，包括全基因组筛选和蛋白质组学方法，已经导致了一个非常广泛的数据集，包含近200个影响Tombusvirus复制，进化和发病机制的宿主蛋白。此外，使用新型无细胞系统与酵母提取物能够支持真实的番茄丛矮病毒复制与细胞生物学方法相结合，使PI能够剖析番茄丛矮病毒复制中鉴定的宿主蛋白的实际功能。PI已经表明，在酵母中的发现也与天然宿主植物相关，从而验证了该方法。这些进展使tombusviruses成为RNA病毒的最前沿，作为一种选择系统，以进一步了解RNA病毒如何“重新编程”受感染的细胞。PI的工作可能会导致对RNA病毒复制和病毒发病机制的重大新见解。TBSV复制酶蛋白质与重要病原体的蛋白质相似的额外优点，所述重要病原体例如丙型肝炎病毒（HCV）、登革热病毒、西尼罗河病毒和其它黄病毒和瘟病毒。总的来说，TBSV的主要进展使PI能够对TBSV可行的宿主因子的作用进行实验，并将刺激研究RNA复制和重要人类病原体的宿主-病原体相互作用的新方法的开发。该提议集中于病毒复制酶复合物中存在的关键宿主因子，即GAPDH（甘油醛-3-磷酸脱氢酶）代谢蛋白，其结合病毒RNA并且对于在酵母和天然宿主植物中的番茄丛矮病毒复制是必需的。这项工作将揭示GAPDH在病毒复制酶中的多种功能。PI的这些研究肯定会导致宿主在RNA病毒复制、进化和病毒-宿主相互作用中的重要作用的进一步重大进展。因此，GAPDH已显示与各种RNA病毒中存在的富含AU的序列结合，包括甲型肝炎病毒（HAV）、丙型肝炎病毒和人副流感病毒3型。以下是该建议的主要优点：（i）病毒RNA复制显然对病毒感染所有类型的生物体至关重要。(ii)酵母和PI开发的真实无细胞检测方法的结合是目前研究宿主因子参与病毒RNA复制机制的最有效方法。(iii)这项研究有望在病毒RNA复制方面带来突破性的新发现。PI开发的高度易处理的体外和体内TBSV系统可以证明对其他不太适合的RNA病毒的研究非常有益。该研究有望通过在病毒复制，宿主-病毒相互作用和病毒适应宿主领域取得突破性成果而造福社会。公共卫生关系：RNA病毒严重依赖宿主因子在感染细胞中复制，对人类健康构成重大风险，并给农业造成重大损失。由于缺乏易处理的病毒-宿主系统，目前对破坏的宿主因子在病毒复制中的作用知之甚少。PI将使用强大的番茄丛矮病毒（TBSV）-酵母模型系统来剖析一种关键的增选宿主因子的作用，即GAPDH（甘油醛-3-磷酸脱氢酶）代谢蛋白，该蛋白与病毒RNA结合，对番茄丛矮病毒在酵母和天然宿主植物中的复制至关重要。这项工作将使人们更深入地了解宿主在RNA病毒感染中的作用，并可能开辟新的抗病毒策略。