BAC Library Production and Maintenance
BAC Library Production and Maintenance
批准号:
7393191
负责人:
Pieter J. de Jong
金额:
$71.72万
依托单位国家:
美国
项目类别:
财政年份:
2002
资助国家:
美国
项目状态:
已结题
起止时间:
2002-03-01 至 2011-01-31
关键词:
Advisory CommitteesAnimal ModelAnimalsApplications GrantsBacterial Artificial ChromosomesBudgetsChargeCloningCollectionCommunitiesComplementEconomic InflationEngineeringEquipmentEvolutionFacility Construction Funding CategoryFeesFreezingFundingGenesGenomeGenomicsGoalsHaploidyHumanIndividualInstitutesInstitutionInvestmentsLaboratoriesLibrariesLocationMaintenanceMammalsMethodsMinorMonitorOrganismOutputPediatric HospitalsPoliciesPreparationProcessProductionQuality ControlRecoveryResearch InfrastructureResearch InstituteResourcesScreening procedureServicesSourceStandards of Weights and MeasuresStem cellsSystems BiologyTechnologyTestingTissuesTransgenic AnimalsU-Series Cooperative AgreementsUnited States National Institutes of HealthUniversitiesWashingtonWisconsinbasecellular engineeringcomparativecostgene functiongenome sequencinghuman diseaseimprovedinterestmammalian genomeprogramsresearch and developmentsizeskillstoolvector
中文摘要
目的是制备10倍冗余的细菌人工染色体(BAG)文库,
由NIH咨询委员会选择,并根据NIH政策传播图书馆。的
图书馆将根据科学界对比较基因组学的兴趣进行调整,并用于
支持全基因组测序项目。该项目是早期合作项目的延续。
美国国立卫生研究院和儿童医院奥克兰研究所之间的协议。应用程序已
与制备(BAC)相关的四个组件:1)文库制备,2)克隆阵列和文库
重复,3)表征,4)研究与开发,以提高工艺效率和BAG
图书馆质量。在第一年,将为具有典型的
哺乳动物基因组大小。这相当于“800,000袋克隆”的制备能力。年间
第二和第三的计划,在袋施工方法的改进可能会导致略有增加,
吞吐量延续计划规模小,没有提供“规模经济”的机会
改进.新的图书馆将补充广泛的剧目袋克隆收藏已经
可用于比较基因组分析。新的克隆集合将由一个标准化的集合进行分析
测试,包括一组基因组标记筛选,有限的BAC末端测序和插入大小
保持战略定力一旦图书馆通过质量控制,新的资源将以
格式与主要应用程序一致。为了方便访问BAG图书馆,一项基于
已确定按使用费收回成本。预计新的BAG资源将继续
通过人类基因组的比较,有助于更好地了解人类基因的功能和进化。
基因与动物物种的光谱不断增长。BAG克隆也将越来越多地用作工具,
为人类疾病建立动物模型。克隆人的广泛传播
项目的组成部分。大多数图书馆的使用费不足以支付维护费用。因此,我们认为,
要求提供小额供资,以支持维持新图书馆和
上一个项目的倡议。通过BACPAC网站提供的图书馆信息
参考资料(bacpac.chori.org)。
英文摘要
The goal is to prepare tenfold redundant Bacterial Artificial Chromosomes (BAG) libraries for species
selected by an NIH advisory committee and to disseminate the libraries in accordance with NIH policy. The
libraries will be tailored to the scientific community's interest in comparative genomics and be used in
support of whole-genome sequencing projects. The project is a continuation of an earlier cooperative
agreement between the NIH and the Children's Hospital Oakland Research Institute. The application has
four components relevant to preparing (BACs): 1) Library preparation, 2) Clone Arraying & Library
Duplication, 3) Characterization, and 4) Research & Development to improve the process efficiency and BAG
library quality. During the first year, four BAG libraries will be prepared for genomes having a typical
mammalian genome size. This corresponds with an "800,000 BAG clone" preparation capacity. During years
two and three of the program, improvements in BAG construction methods may result in slight increases in
throughput. The small size of the continuation program does not offer opportunities for "economy of scale"
improvements. The new libraries will complement the extensive repertoire of BAG clone collections already
available for comparative genome analysis. The new clone collections will be analyzed by a standardized set
of tests, including screening with a set of genomic markers, limited BAC-end sequencing and insert size
determination. Once the libraries pass the quality controls, the new resources will be made available in a
format consistent with major applications. To facilitate access to the BAG libraries, a screening service based
on cost recovery by user fees has been established. It is expected that the new BAG resources will continue
to contribute to better understanding of human gene function and evolution through comparison of human
genes with a growing spectrum of animal species. BAG clones will also increasingly be used as tools to
create animal models for human diseases. Widespread dissemination of the clones is an essential
component of the project. User fees for most libraries cannot cover the costs of maintenance. Hence,
mimimal funding is requested in support of the maintenance of the new libraries and those generated under
the previous program initiative. Information about libraries available through the website for BACPAC
Resources (http://bacpac.chori.org).
期刊论文(2)
专著(0)
科研奖励(0)
会议论文
DOI:
10.1371/journal.pgen.0020223
发表时间:
2006-12-29
期刊:
PLoS genetics
影响因子:
4.5
作者:
[Carbone L, Vessere GM, ten Hallers BF, Zhu B, Osoegawa K, Mootnick A, Kofler A, Wienberg J, Rogers J, Humphray S, Scott C, Harris RA, Milosavljevic A, de Jong PJ]
通讯作者:
de Jong PJ
Bis[4-(dimethyl-amino)pyridinium] tetra-bromidobis(4-chloro-phen-yl)stannate(IV)-4-bromo-chloro-benzene (1/1).
双[4-(二甲基氨基)吡啶鎓]四溴双(4-氯-苯基)锡酸盐(IV)-4-溴-氯-苯(1/1)。
DOI:
10.1107/s1600536809030232
发表时间:
2009
期刊:
Acta crystallographica. Section E, Structure reports online
影响因子:
--
作者:
[Lee,SeeMun, Lo,KongMun, MohdAli,Hapipah, Robinson,WardT]
通讯作者:
Robinson,WardT
High-throughput targeted mutagenesis of mouse stem cell lines
-
批准号:7921328
-
项目类别:
-
资助金额:$510.0万
-
财政年份:2009
-
负责人:Pieter J. de Jong
-
依托单位:
BAC LIBRARY PRODUCTION FOR COMPARATIVE GENETICS
-
批准号:7716066
-
项目类别:
-
资助金额:$2.39万
-
财政年份:2008
-
负责人:Pieter J. de Jong
-
依托单位:
High-throughput targeted mutagenesis of mouse stem cell lines
-
批准号:7496640
-
项目类别:
-
资助金额:$468.75万
-
财政年份:2006
-
负责人:Pieter J. de Jong
-
依托单位:
High-throughput targeted mutagenesis of mouse stem cell lines
-
批准号:7932973
-
项目类别:
-
资助金额:$468.75万
-
财政年份:2006
-
负责人:Pieter J. de Jong
-
依托单位:
High-throughput targeted mutagenesis of mouse stem cell lines
-
批准号:7687011
-
项目类别:
-
资助金额:$468.95万
-
财政年份:2006
-
负责人:Pieter J. de Jong
-
依托单位:
High-throughput targeted mutagenesis of mouse stem cell lines
-
批准号:7455583
-
项目类别:
-
资助金额:$2.88万
-
财政年份:2006
-
负责人:Pieter J. de Jong
-
依托单位:
BAC LIBRARY PRODUCTION FOR COMPARATIVE GENETICS
-
批准号:7349831
-
项目类别:
-
资助金额:$3.72万
-
财政年份:2006
-
负责人:Pieter J. de Jong
-
依托单位:
High-throughput targeted mutagenesis of mouse stem cell lines
-
批准号:7151870
-
项目类别:
-
资助金额:$481.13万
-
财政年份:2006
-
负责人:Pieter J. de Jong
-
依托单位:
High-throughput targeted mutagenesis of mouse stem cell lines
-
批准号:7284843
-
项目类别:
-
资助金额:$411.44万
-
财政年份:2006
-
负责人:Pieter J. de Jong
-
依托单位:
Screening to Find Genes Causing Cleft Lip and Palate
-
批准号:6962888
-
项目类别:
-
资助金额:$20.01万
-
财政年份:2005
-
负责人:Pieter J. de Jong
-
依托单位:
Screening to Find Genes Causing Cleft Lip and Palate
-
批准号:7115858
-
项目类别:
-
资助金额:$23.45万
-
财政年份:2005
-
负责人:Pieter J. de Jong
-
依托单位:
BAC LIBRARY PRODUCTION FOR COMPARATIVE GENETICS
-
批准号:7165393
-
项目类别:
-
资助金额:$3.0万
-
财政年份:2005
-
负责人:Pieter J. de Jong
-
依托单位:
BAC Library Production for Comparative Genetics
-
批准号:6805895
-
项目类别:
-
资助金额:$15.0万
-
财政年份:2003
-
负责人:Pieter J. de Jong
-
依托单位:
BAC LIBRARY PRODUCTION FOR COMPARATIVE GENETICS
-
批准号:6942035
-
项目类别:
-
资助金额:$0.32万
-
财政年份:2003
-
负责人:Pieter J. de Jong
-
依托单位:
BAC Library Production for Comparative Genetics
-
批准号:6623651
-
项目类别:
-
资助金额:$160.26万
-
财政年份:2002
-
负责人:Pieter J. de Jong
-
依托单位:
BAC Library Production and Maintenance
-
批准号:7057051
-
项目类别:
-
资助金额:$74.88万
-
财政年份:2002
-
负责人:Pieter J. de Jong
-
依托单位:
BAC Library Production and Maintenance
-
批准号:7270059
-
项目类别:
-
资助金额:$71.69万
-
财政年份:2002
-
负责人:Pieter J. de Jong
-
依托单位:
BAC Library Production for Comparative Genetics
-
批准号:6750663
-
项目类别:
-
资助金额:$164.43万
-
财政年份:2002
-
负责人:Pieter J. de Jong
-
依托单位:
BAC Library Production for Comparative Genetics
-
批准号:6469137
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项目类别:
-
资助金额:$90.0万
-
财政年份:2002
-
负责人:Pieter J. de Jong
-
依托单位:
BAC Library Production for Comparative Genetics
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批准号:7094627
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项目类别:
-
资助金额:$35.0万
-
财政年份:2002
-
负责人:Pieter J. de Jong
-
依托单位:
海外基金