GENEINDEX-A TOOL FOR ANALYZING N-TUPES ACROSS WHOLE GENOMES

GENEINDEX - 分析整个基因组中 N 型的工具

• 批准号: 7723373
• 负责人: Craig Stewart
• 金额: $ 0.05万
• 依托单位: CARNEGIE-MELLON UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-08-01 至 2009-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7723373
• 关键词: Code; Communities; Computer Retrieval of Information on Scientific Projects Database; Computer software; Funding; Genome; Grant; Institution; Memory; Purpose; Research; Research Personnel; Resources; Running; Source; System; Testing; United States National Institutes of Health; programs; tool

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. GeneIndex is a program that analyzes whole genomes for k-tuples of arbitrary lenght up to 31. This is a dramatic expansion upon current capabilities of programs that analyze entire genomes. However, the memory requirements are so large that it is possible (in practice) only to run it on clusters. The purpose of this project is to test and port GeneIndex to several TeraGrid systems so that it can be made available as part of the community code portion of the software accessible tousers of the TeraGrid

这个子项目是许多研究子项目中的一个 由NIH/NCRR资助的中心赠款提供的资源。子项目和 研究者（PI）可能从另一个NIH来源获得了主要资金， 因此可以在其他CRISP条目中表示。所列机构为 研究中心，而研究中心不一定是研究者所在的机构。 GeneIndex是一个程序，分析整个基因组的任意长度高达31的k元组。这是对目前分析整个基因组的程序能力的巨大扩展。然而，内存需求是如此之大，以至于（实际上）只能在集群上运行它。这个项目的目的是测试和移植基因索引到几个TeraGrid系统，使其可以作为TeraGrid的软件可访问用户的社区代码部分的一部分