Exploring the molecular basis of domain-domain communication in aminoacyl-tRNA sy

描述（由申请人提供）：氨酰-tRNA合成酶（ARS）在最重要的细胞过程之一，即蛋白质生物合成中起关键作用。它们催化氨基酸与其同源转移RNA（tRNA）的共价连接，这是遗传密码翻译的重要步骤。ARS是多结构域蛋白质，其结构域在tRNA的氨酰化中具有不同的作用，并在蛋白质合成中保持高准确性。这些领域以高度协调的方式履行其具体职能。因此，它们功能的协调需要域与域之间的通信。各种生化和结构研究提供的证据表明，域域通信显然存在于ARS。一般来说，多结构域蛋白质中的远距离结构域之间的通信被认为是通过结构元件的耦合运动网络传播的。然而，对于ARS，信号从一个结构域传播到另一个结构域的分子机制仍然知之甚少。本研究旨在探讨两种不同类型ARS中结构域间通讯的分子基础。特别是，我们将研究进化耦合网络的残基在促进结构域动力学的作用，从而保持蛋白质生物合成的保真度。鉴于问题的多学科性质，我们的研究将采用计算和实验方法。主要研究者和一个由四名本科生组成的研究团队将进行一些涉及生物信息学，统计耦合分析和模拟（正常模式和分子动力学）的计算研究，以深入了解ARS中的进化-结构-动力学关系。将对特定残基进行互补诱变研究，并评价其在酶功能中的作用。这些实验研究将提供沟通途径的进一步细节。在分子水平上理解ARSs的结构域-结构域通信对药物设计具有重要意义。ARSs在蛋白质合成中的重要作用使其成为潜在的药物靶点。在非催化位点的别构残基的鉴定可以被利用来开发针对致病性ARS的新一代治疗剂。我们的研究结果可用于设计靶向与氨酰化和/或编辑活性位点能量偶联的远端位点的小分子。公共卫生相关性：在分子水平上理解ARS的结构域间通讯对药物设计具有重要意义。ARSs在蛋白质合成中的重要作用使其成为潜在的药物靶点。我们的研究结果可用于设计靶向与氨酰化和/或编辑活性位点能量偶联的远端位点的小分子。

DESCRIPTION (provided by applicant): Aminoacyl-tRNA synthetases (ARSs) play a key role in one of the most important cellular processes, namely protein biosynthesis. They catalyze the covalent attachment of amino acids to their cognate transfer RNAs (tRNAs), an essential step in the translation of the genetic code. ARSs are multi-domain proteins, with domains that have distinct roles in aminoacylation of tRNA and maintaining high accuracy in protein synthesis. These domains carry out their specific functions in a highly coordinated manner. The coordination of their function, therefore, requires domain-domain communication. Various biochemical and structural studies provide evidence to suggest that domain-domain communication clearly exists in ARSs. In general, communication between distantly located domains in multi-domain proteins is believed to be propagated through networks of coupled motions of structural elements. However, for ARSs, the molecular mechanism of signal propagation from one domain to another domain remains poorly understood. This proposal aims to explore the molecular basis of domain-domain communication in two different classes of ARSs. In particular, we will examine the role of evolutionarily coupled networks of residues in facilitating domain dynamics, thereby maintaining the fidelity of protein biosynthesis. Given the multidisciplinary nature of the problem, our study will employ both computational and experimental methods. The principal investigator and a research team of four undergraduate students will carry out a number of computational studies involving bioinformatics, statistical coupling analysis, and simulations (normal mode and molecular dynamics) to gain insight into the evolution-structure-dynamics relationships in ARSs. Complementary mutagenesis studies of specific residues will be conducted and their role in enzyme function will be evaluated. These experimental studies will provide further details of the communication pathway. Understanding domain-domain communication of ARSs at the molecular level has significant implications for drug design. The essential role of ARSs in protein synthesis has made them potential drug targets. The identification of allosteric residues at a non-catalytic site can be exploited to develop a new generation of therapeutics targeted against pathogenic ARSs. Results of our studies can be used in the design of small molecules targeting distant sites that are energetically coupled to the aminoacylation and/or the editing active site(s). PUBLIC HEALTH RELEVANCE: Statement Understanding domain-domain communication of ARSs at the molecular level has significant implications for drug design. The essential role of ARSs in protein synthesis has made them potential drug targets. Results of our studies can be used in the design of small molecules targeting distant sites that are energetically coupled to the aminoacylation and/or the editing active site(s).