MOLECULAR RECOGNITION DURING PRE-MRNA SPLICING

Pre-mRNA 剪接过程中的分子识别

• 批准号: 8170296
• 负责人: CLARA KIELKOPF
• 金额: $ 0.03万
• 依托单位: STANFORD UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-05-01 至 2011-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8170296
• 关键词: 3' Splice Site; Address; Architecture; Complex; Computer Retrieval of Information on Scientific Projects Database; Funding; Genes; Goals; Grant; Homologous Gene; Housing; Human; Institution; Phosphorylation; Proteins; RNA; RNA Splicing; Recruitment Activity; Research; Research Personnel; Resources; Robotics; SF1; Screening procedure; Signal Transduction; Site; Small Nuclear RNA; Source; Spliceosomes; Staging; Structure; Transcript; United States National Institutes of Health; base; mRNA Precursor; molecular recognition; research study; synchrotron radiation

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. The overall goal of our proposed is to determine the structural basis for 3? splice site recognition. The majority of human gene transcripts are regulated by pre-mRNA splicing. The splice sites are sequentially recognized by protein and RNA components of the spliceosome, a pre-mRNA splicing machine composed of more than 100 proteins and 5 small nuclear RNAs. A complex composed of essential splicing factors SF1, U2AF65, and U2AF35 recognizes the pre-mRNA signals and recruits the core splicing machinery to a target splice site. Specific aims of this proposal address the following central questions concerning the critical early stages of pre-mRNA splicing: (1) What is the structure of a highly-conserved SF1 domain that lacks structural homologues? (2) By what structural means does phosphorylation of this SF1 domain enhance association with U2AF? (3) By what structural means does U2AF adapt to diverse splice sites? (4) What is the three-dimensional architecture of the SF1 / U2AF complex with the target splice site? Synchrotron radiation is essential to address the aims of this proposal for reasons including: (i) Tunable wavelengths are necessary for multiwavelength anomalous dispersion experiments; (ii) The robotic capability greatly facilitates the extensive screening required to identify useful crystals for Aim 1; (iii) Crystal size is small and consequently diffraction is prohibitively weak using conventional in-house x-ray sources.

这个子项目是许多研究子项目中利用 资源由NIH/NCRR资助的中心拨款提供。子项目和 调查员(PI)可能从NIH的另一个来源获得了主要资金， 并因此可以在其他清晰的条目中表示。列出的机构是 该中心不一定是调查人员的机构。 我们建议的总体目标是确定3？剪接位点识别。大多数人类基因转录本是由前-mRNA剪接调控的。剪接体的蛋白质和RNA组分依次识别剪接点，剪接体是一个由100多个蛋白质和5个小核RNA组成的前mRNA剪接机。由必需剪接因子SF1、U2AF65和U2AF35组成的复合体识别前mRNA信号，并将核心剪接机器招募到目标剪接位点。本提案的具体目的是解决以下关于Pre-mRNA剪接关键早期阶段的核心问题：(1)缺乏结构同源的高度保守的SF1结构域的结构是什么？(2)这种SF1结构域的磷酸化通过什么结构手段增强了与U2AF的联系？(3)U2AF通过什么结构手段适应不同的剪接位点？(4)SF1/U2AF复合体与目标剪接位点的三维结构是什么？同步辐射对于实现本提案的目标至关重要，原因包括：(1)波长可调对于多波长异常色散实验是必要的；(2)机器人能力极大地便利了为目标1确定有用晶体所需的广泛筛选；(3)晶体尺寸很小，因此使用常规内部X射线源的衍射非常弱。