The Molecular Structure of the RNA Polymerase Portal of a Bacteriophage-Reovirus

噬菌体呼肠孤病毒 RNA 聚合酶门户的分子结构

• 批准号: 8269906
• 负责人: Paul Jeffrey Gottlieb
• 金额: $ 34.3万
• 依托单位: CITY COLLEGE OF NEW YORK
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-06-01 至 2015-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8269906
• 关键词: Adolescent; Antibodies; Antiviral Agents; Arts; Bacteria; Bacteriophages; Biological Assay; Capsid; Cells; Centers for Disease Control and Prevention (U.S.); Cessation of life; Characteristics; Childhood; Cities; Clinical; Collaborations; Communities; Complex; Computer software; Cryoelectron Microscopy; Cystovirus; DNA; DNA-Directed RNA Polymerase; Data; Developing Countries; Development; Diarrhea; Doctor of Medicine; Doctor of Philosophy; Double-Stranded RNA; Drug Delivery Systems; Drug Formulations; Education; Educational Curriculum; Educational workshop; Electron Microscopy; Electrons; Elements; Emerging Communicable Diseases; Family; Fluorescence; Foundations; Funding; Gastroenteritis; Genes; Genetic Engineering; Genetic Transcription; Genome; Genomic Segment; Goals; Grant; Hospitalization; Human; Hydration status; Image; Immunology; Indium; Infection; Influenza; Institutes; Institution; Knowledge; Laboratories; Laboratory Personnel; Laboratory Research; Lasers; Learning; Light-Scattering Spectroscopy; Medical; Medical Students; Microbiology; Minority; Modeling; Molecular Biology; Molecular Machines; Molecular Models; Molecular Structure; Monoclonal Antibodies; Morbidity - disease rate; Motor; New York; New York City; Nucleocapsid; Nucleotides; Optical Methods; Optics; Paper; Pharmacologic Substance; Polymerase; Positioning Attribute; Postdoctoral Fellow; Preparation; Primary Care Physician; Process; Proteins; Publications; Publishing; Qualifying; RNA; RNA chemical synthesis; RNA replication; Recombinants; Reoviridae; Reovirus; Reproduction; Research; Research Infrastructure; Research Personnel; Research Project Grants; Research Proposals; Resistance; Resources; Role; Rotavirus; Schools; Science; Shapes; Side; Spectrum Analysis; Staining method; Stains; Structural Models; Structure; Students; System; Technology; Testing; Tomogram; Training; Transcript; United States; United States National Institutes of Health; Vaccines; Viral; Viral Packaging; Viral Proteins; Virus; Virus Diseases; Work; Writing; base; career; clinically significant; college; design; doctoral student; genetic regulatory protein; graduate student; in vitro Assay; innovation; medical schools; medically underserved; meetings; microbial; molecular modeling; mutant; nucleoside triphosphatase; particle; pathogen; professor; programs; public health relevance; reconstruction; structural biology; symposium; technology/technique; tomography; tool; viral RNA

DESCRIPTION (provided by applicant): Our study is directed towards understanding the interactions that exist among the proteins that constitute the RNA polymerase portal of the cystoviruses. This molecular machine selects, packages, and replicates the viral RNA genome segments. One portal is located on each vertex of the 12-sided polymerase complex (PX) a structure that forms the viral core. This bacteriophage family constitutes a unique bacterial reovirus that serves as a simple and important molecular model for their clinically significant cousins, the Reoviridae. Our overall objective is to establish a detailed structural model for the reoviruses portal apparatus using cryo-electron microscopy (cryo-EM). We will then better understand how they replicate and package their double-stranded RNA (dsRNA) genomes. This knowledge is of critical importance in the design of antiviral pharmaceuticals for pathogenic reoviruses, in particular rotavirus, a significant cause of childhood morbidity in third world countries. My developmental and career objective is to employ a qualified research team that studies the molecular biology and structure of clinically significant viruses at the City College of New York (CCNY) Medical School. The cystovirus model offers an excellent introductory virus project that utilizes the resources for molecular and structural biology recently established at the CCNY campus in particular the New York State Foundation for Science, Technology and Innovation (NYSTAR) funded New York Structural Biology Center (NYSBC). The Gottlieb laboratory personnel have utilized the hardware and software at this new facility and have published the center's first electron-cryo- tomography paper. We are completing a second electron cryo-microscopy paper that constitutes the preliminary study for this proposal. We have recently established a new optical method to examine the dynamic conformational shape changes that occur in viral proteins during the infection process. This research is performed in collaboration with physicists at the Institute for Ultrafast Spectroscopy and Lasers (IUSL) on the CCNY campus. We have included an aim in the research plan directed towards perfecting our optical assays for the analysis of biochemically active cystovirus PX. The PX is known to radically expand during viral RNA packaging and replication. We believe that this portion of our research proposal fits well within the goals of the current project. We anticipate that the optical qualities of viral proteins that we discover are applicable to human pathogens, in particular influenza. PUBLIC HEALTH RELEVANCE: Group A rotaviruses, as noted by the Centers for Disease Control (CDC), are the major cause of juvenile diarrhea leading to several thousand hospitalizations annually in the United States and close to a million deaths worldwide. There is no antiviral formulation to treat this illness and the current vaccine is not 100% effective. Our research utilizes cystoviruses, a type of rotavirus, which only replicate in bacteria cells. This is a system that we can study in great detail to understand the mechanisms of virus reproduction, and provide information critical to the development of anti-rotavirus compounds.

描述（由申请人提供）：我们的研究旨在了解构成囊病毒RNA聚合酶门户的蛋白质之间存在的相互作用。这种分子机器选择、包装和复制病毒RNA基因组片段。一个入口位于12面聚合酶复合体（PX）的每个顶点上，这是一种形成病毒核心的结构。这种噬菌体家族构成了一种独特的细菌呼肠孤病毒，为其临床意义重大的表亲呼肠孤病毒科提供了简单而重要的分子模型。我们的总体目标是利用冷冻电子显微镜（cryo-EM）建立呼肠孤病毒门户装置的详细结构模型。然后我们将更好地了解它们是如何复制和包装它们的双链RNA （dsRNA）基因组的。这方面的知识对于设计针对致病性呼肠孤病毒（尤其是轮状病毒）的抗病毒药物至关重要，轮状病毒是第三世界国家儿童发病的一个重要原因。我的发展和职业目标是在纽约城市学院（CCNY）医学院聘请一个合格的研究团队，研究临床重要病毒的分子生物学和结构。囊病毒模型提供了一个很好的介绍性病毒项目，它利用了最近在CCNY校园建立的分子和结构生物学资源，特别是纽约州科学、技术和创新基金会（NYSTAR）资助的纽约结构生物学中心（NYSBC）。戈特利布实验室的工作人员已经在这个新设施中使用了硬件和软件，并发表了该中心的第一篇电子-低温断层扫描论文。我们正在完成第二篇电子冷冻显微镜论文，这是本提案的初步研究。我们最近建立了一种新的光学方法来检查病毒蛋白在感染过程中发生的动态构象形状变化。这项研究是与CCNY校园的超快光谱和激光研究所（IUSL）的物理学家合作进行的。我们在研究计划中包含了一个目标，旨在完善我们用于分析生化活性囊病毒PX的光学分析方法。众所周知，在病毒RNA包装和复制过程中，PX会急剧膨胀。我们相信我们的研究计划的这一部分非常符合当前项目的目标。我们预计，我们发现的病毒蛋白的光学特性适用于人类病原体，特别是流感。