Biochemistry and Genetics of Chromatin Assembly Factors in Drosophila

果蝇染色质组装因子的生物化学和遗传学

• 批准号: 8327214
• 负责人: DMITRY V FYODOROV
• 金额: $ 33.69万
• 依托单位: ALBERT EINSTEIN COLLEGE OF MEDICINE
• 依托单位国家: 美国
• 财政年份: 2005
• 资助国家: 美国
• 起止时间: 2005-09-15 至 2014-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8327214
• 关键词: ACF complex; ATP Hydrolysis; Address; Affect; Alleles; Biochemical; Biochemical Genetics; Biochemical Reaction; Biochemistry; Biological Process; Cell Cycle; Cell Nucleus; Cells; Chromatin; Chromatin Fiber; Chromatin Modeling; Chromosomes; Commit; Complex; Coupled; DNA; DNA Packaging; DNA Repair; DNA biosynthesis; Defect; Deposition; Development; Diagnosis; Drosophila genus; Embryo; Enzymes; Excision; Filament; Genes; Genetic; Genetic Transcription; Genome; Genomics; Goals; Histones; Human; ISWI; In Vitro; Knowledge; Maintenance; Mediating; Metabolism; Methods; Molecular; Molecular Chaperones; Motor; Mutation; Nuclear; Nucleosomes; Outcome Study; Play; Process; Property; Protamines; Proteins; Reaction; Regulation; Role; Techniques; Transcription Process; Variant; Work; base; chromatin assembly factor I; chromatin remodeling; design; fly; human disease; in vivo; male; mutant; novel; public health relevance; reconstitution; repaired; research study; sperm cell

DESCRIPTION (provided by applicant): The assembly of chromatin in vivo is mediated by a concerted action of core histone chaperones and ATP-dependent nucleosome assembly factors. The chromatin assembly is an important reaction that interfaces all major processes of the nuclear DNA metabolism. Our long-term goal is to understand how eukaryotic chromosomes are assembled, reproduced and regulated. Drosophila CHD1 and ISWI-containing complexes ACF, NoRC/ToRC and RSF can mediate nucleosome assembly in an ATP-dependent manner in vitro and in vivo. The specific hypothesis is that ACF and ACF-like factors mediate reconstitution of oligonucleosome filament as well as higher-order chromatin and can regulate nuclear reactions, such as transcription, DNA replication and repair. In the early embryo, chromatin assembly in the male pronucleus is preceded by sperm chromatin remodeling (SCR) and eviction of paternal protamines. This reaction is mediated by a separate set of factors that we recently identified. The specific hypothesis is that, similar to nucleosome assembly, SCR is mediated by a concerted action of protamine chaperones and ATP-dependent motor proteins. The specific aims are to: 1. Investigate mechanisms of ATP-dependent chromatin assembly in vitro. We will determine the molecular basis for intrinsic nucleosome assembly activity of ISWI and CHD1. We will analyze precursors of nucleosome assembly and formation of higher-order chromatin fiber. We will study the interplay between ATP-dependent factors and histone chaperones during chromatin assembly. 2. Examine activities and targets of ACF and ACF-like factors in vivo in Drosophila. We will examine genomic, subcellular and cell-cycle dependent localization of chromatin assembly factors. We will explore the function of ACF-like factors in the deposition of core and linker histones into chromosomes. We will analyze specific biological functions of a novel Drosophila assembly factor NoRC/ToRC. 3. Analyze biochemical and biological functions of factors that mediate SCR. We will characterize factors that mediate SCR and molecular mechanisms of their action. We will elucidate biological functions of SCR-mediating factors in vivo. Our work will add to the fundamental understanding of chromatin assembly and related nuclear processes (transcription, replication and repair). It will help to design methods of diagnosis and treatment of human diseases that involve defects in these nuclear processes. Furthermore, our studies will contribute to the development of molecular techniques to reconstitute functional metazoan chromosomes. PUBLIC HEALTH RELEVANCE: Chromatin is the native state of nuclear DNA in human cells. Packaging of DNA into chromatin is essential for the maintenance of genome integrity and regulation of DNA metabolism. The goal of this project is to understand the function of factors that mediate the assembly of chromatin. Our work will help to design methods of diagnosis and treatment of human diseases that involve defects in nuclear reactions.

描述（由申请人提供）：体内染色质的组装是由核心组蛋白伴侣和 ATP 依赖性核小体组装因子的协同作用介导的。染色质组装是连接核 DNA 代谢所有主要过程的重要反应。我们的长期目标是了解真核染色体是如何组装、复制和调节的。 果蝇CHD1和含有ISWI的复合物ACF、NoRC/ToRC和RSF可以在体外和体内以ATP依赖性方式介导核小体组装。具体假设是ACF和ACF样因子介导寡核小体丝以及高阶染色质的重建，并且可以调节核反应，例如转录、DNA复制和修复。 在早期胚胎中，雄性原核中的染色质组装先于精子染色质重塑（SCR）和父本鱼精蛋白的驱逐。这种反应是由我们最近确定的一组单独的因素介导的。具体假设是，与核小体组装类似，SCR 是由鱼精蛋白伴侣和 ATP 依赖性运动蛋白的协同作用介导的。 具体目标是： 1. 研究体外 ATP 依赖性染色质组装的机制。我们将确定 ISWI 和 CHD1 内在核小体组装活性的分子基础。我们将分析核小体组装的前体和高阶染色质纤维的形成。我们将研究染色质组装过程中 ATP 依赖性因子和组蛋白伴侣之间的相互作用。 2. 检查果蝇体内 ACF 和 ACF 样因子的活性和靶点。我们将检查染色质组装因子的基因组、亚细胞和细胞周期依赖性定位。我们将探讨 ACF 样因子在核心和连接组蛋白沉积到染色体中的功能。我们将分析新型果蝇组装因子NoRC/ToRC的具体生物学功能。 3.分析SCR介导因子的生化和生物学功能。我们将描述介导 SCR 的因素及其作用的分子机制。我们将阐明体内 SCR 介导因子的生物学功能。 我们的工作将增进对染色质组装和相关核过程（转录、复制和修复）的基本理解。它将有助于设计诊断和治疗涉及这些核过程缺陷的人类疾病的方法。此外，我们的研究将有助于重建功能性后生动物染色体的分子技术的发展。 公共卫生相关性：染色质是人类细胞中核 DNA 的天然状态。将 DNA 包装到染色质中对于维持基因组完整性和调节 DNA 代谢至关重要。该项目的目标是了解介导染色质组装的因素的功能。我们的工作将有助于设计诊断和治疗涉及核反应缺陷的人类疾病的方法。