Using budding yeast to study LINE (L1) retrotransposition

使用芽殖酵母研究 LINE (L1) 逆转录转座

• 批准号: 8499365
• 负责人: Jeffrey S Han
• 金额: $ 4.02万
• 依托单位: CARNEGIE INSTITUTION OF WASHINGTON, D.C.
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-07-01 至 2013-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8499365
• 关键词: Address; Animal Model; Back; Beryllium; Binding; Biology; Candida albicans; Cells; Cellular biology; Chromosomes; Cloning; Collection; Conflict (Psychology); DNA; DNA Damage; DNA Sequence Rearrangement; Data Set; Elements; Environment; Eukaryota; Evaluation; Event; Family; Fertility; Frequencies; Generations; Genetic; Genetic Screening; Genome; Genomics; Germ Cells; Homologous Gene; Human; Human Genome; Immune response; Individual; Infertility; Integration Host Factors; Knock-out; L1 Elements; Location; Mammalian Cell; Mammals; Meiosis; Modeling; Molecular; Molecular Biology; Nuclear; ORF2 protein; Organism; Parasites; Pathway interactions; Process; Proteins; Proteome; RNA; Regulation; Relative (related person); Research; Retrotransposition; Retrotransposon; Ribonucleoproteins; Saccharomyces cerevisiae; Saccharomycetales; Small RNA; Sterility; Structure; System; Technology; Time; Variant; Virus; Yeast Model System; Yeasts; flexibility; genetic element; genome sequencing; insight; interest; mammalian genome; mutant; programs; public health relevance; response; success; tool

DESCRIPTION (provided by applicant): We have long-term interests in understanding the ongoing evolutionary battle between genomic parasites and the host organism, and the cellular programs that have evolved in response to these conflicts. We study Long Interspersed Nuclear Elements (LINEs, or L1) due to their spectacular success in colonizing the human genome. L1s are retrotransposons, genetic elements that replicate through an RNA intermediate and integrate back into the chromosome. L1s are responsible for generating over one third of mammalian genome sequence, and L1 retrotransposition causes genome structural variation between human individuals. In addition, L1 is generally expressed in germ cells, and loss of L1 regulation is associated with sterility in mammals. This is likely due to the genotoxic effects of L1 retrotransposition. Since most cases of human sterility are not understood at the molecular level, this has potential significance for fertility research. We want to know how L1s replicate and how L1s are regulated. We are using a budding yeast (Saccharomyces cerevisiae) model to study unknown aspects of L1 retrotransposition. S. cerevisiae is well suited for this purpose; it is a preeminent organism for the study of genetics and cell biology of basic eukaryotic processes, and often the proving ground for the latest technologies in molecular biology. S. cerevisiae chromosomes are easily manipulated, providing great experimental flexibility, and the streamlined genome and proteome simplify the analysis of large data sets (relative to higher eukaryotes). The element we are specifically using in the budding yeast model is an L1 homolog from Candida albicans. We will clone and analyze retrotransposition insertions. We will explore the mechanism for circular retrotransposition product formation. We will investigate how L1 proteins recognize and bind to L1 RNA. We will examine the location and dynamics of L1 ribonucleoproteins (RNPs). We will also carry out genetic screens to identify host factors involved in the L1 replication cycle and ask whether meiosis represents a particular permissive "state" which is optimal for L1 RNP action. Finally, we will model the introduction and expansion of a family of L1 elements in a previously L1-naove host (budding yeast). Overall, these studies will provide insight into the mechanism of L1 replication and how L1s interact with a host cell.

描述（由申请人提供）：我们长期致力于了解基因组寄生虫和宿主生物之间正在进行的进化斗争，以及为应对这些冲突而进化的细胞程序。我们研究长穿插核元素（LINEs，或L1），因为它们在人类基因组中取得了惊人的成功。l1是逆转录转座子，通过RNA中间体复制并整合回染色体的遗传元件。哺乳动物超过三分之一的基因组序列由L1产生，而L1的反转录导致人类个体之间的基因组结构差异。此外，L1通常在生殖细胞中表达，L1调控的缺失与哺乳动物的不育有关。这可能是由于L1逆转录的基因毒性作用。由于大多数人类不孕症的病例不能在分子水平上理解，这对生育研究具有潜在的意义。我们想知道l1是如何复制的以及l1是如何被调控的。我们正在使用出芽酵母（酿酒酵母）模型来研究L1逆转录转位的未知方面。酿酒葡萄球菌很适合这个目的；它是研究遗传学和基本真核过程细胞生物学的卓越生物，通常是分子生物学最新技术的试验场。酿酒酵母的染色体很容易操作，提供了很大的实验灵活性，并且流线型的基因组和蛋白质组简化了大型数据集的分析（相对于高等真核生物）。我们在出芽酵母模型中特别使用的元件是来自白色念珠菌的L1同源物。我们将克隆和分析逆转录插入。我们将探讨圆形反转置产物形成的机制。我们将研究L1蛋白如何识别和结合L1 RNA。我们将研究L1核糖核蛋白（RNPs）的位置和动力学。我们还将进行遗传筛选，以确定参与L1复制周期的宿主因子，并询问减数分裂是否代表一种特定的允许“状态”，这对L1 RNP的作用是最佳的。最后，我们将模拟L1元件家族在先前L1- nave宿主（出芽酵母）中的引入和扩展。总的来说，这些研究将深入了解L1复制的机制以及L1如何与宿主细胞相互作用。