Applying High-Performance Protein Engineering Tools to HIV Immunogen Design

描述（由申请方提供）：被动转移中和抗体（nAb）提供了针对HIV-1感染的明确保护，但这些nAb的鉴定和机制研究尚未导致保护性疫苗的开发。我们假设，以前的免疫原设计工作取得了有限的成功，由于其有限的范围和限制的重点。缺乏高性能的筛选平台严重限制了免疫原的设计，并阻碍了基础科学研究成果转化为疫苗开发。当试图在自然发生的保护性免疫反应基本上不存在的疾病背景下引发针对高度多样性病毒的保护性抗体时，我们认为所使用的技术和方法的规模必须与任务的规模充分匹配。组合的高通量蛋白质工程平台可以实现成功开发预防性HIV疫苗所必需的景观覆盖，并使我们能够将我们对nAb的理解转化为保护性抗体反应的诱导。因此，我们建议开发高性能的蛋白质工程工具，以根据定义的标准筛选数十亿个HIV包膜三聚体序列变体，使我们能够进化包膜免疫原，以有效地呈现能够驱动保护性抗体生成的功能相关和免疫原性表位。我们描述的多管齐下的策略既利用了用于传统免疫原设计的日益增长的试剂工具包，包括十几种新的广泛的nAb，又利用了改进的手段来功能性地解析存在于不同的多克隆样品中的Ab;并进一步探索了基于选择性参与nAb的互补策略。ve和生殖系抗体库，我们相信解决了以前的免疫原设计工作的根本局限性，无偏正向工程化策略以诱导中和抗体的产生。最终，这些研究开发的工具代表了能够根据灵活的设计标准从巨大的序列多样性中快速选择包膜变体的适应性平台，并且可以通过桥接翻译缺口（已被称为“nAb问题”）来打开免疫原设计的根本突破的道路。

DESCRIPTION (provided by applicant): Passively transferred neutralizing antibodies (nAbs) have provided definitive protection from HIV-1 infection, yet identification and mechanistic study of these nAbs has not resulted in the development of a protective vaccine. We hypothesize that previous immunogen design efforts have achieved limited success due to their limited scope and restricted focus. The lack of a high-performance screening platform places severe constraints on immunogen design and has impeded the translation of findings from basic science into vaccine development. When attempting to elicit protective antibodies against a highly diverse virus in the context of a disease in which naturally occurring protective immune responses are largely absent, we posit that the scale of technology and methods used must be adequately matched to the scale of the task. Combinatorial, high-throughput protein engineering platforms can achieve the landscape coverage that may be necessary for successful development of a preventative HIV vaccine, and allow us to translate our understanding of nAbs into the induction of protective antibody responses. We therefore propose to develop high-performance protein engineering tools to screen billions of HIV envelope trimer sequence variants according to defined criteria, allowing us to evolve envelope immunogens tailored to effectively present functionally relevant and immunogenic epitopes capable of driving the generation of protective antibodies. The multi-pronged strategy we describe both leverages the growing reagent toolkit for traditional immunogen design, including more than a dozen new broad nAbs, and improved means to functionally parse Abs present in diverse, polyclonal samples; and further explores a complementary strategy based on selective engagement of na¿ve and germline antibody repertoires which we believe addresses the fundamental limitation of previous immunogen design efforts and represents an innovative and unbiased forward engineering strategy to induce the generation of neutralizing antibodies. Ultimately, the tools developed by these studies represent adaptable platforms capable of rapidly selecting envelope variants from vast sequence diversity according to flexible design criteria, and may open a path to a fundamental breakthrough in immunogen design by bridging the translational gap that has come to be known as "the nAb problem".