Structural Studies of epigenetic regulation of rRNA gene by TTF-I

TTF-I对rRNA基因表观遗传调控的结构研究

• 批准号: 8570593
• 负责人: Carlos R Escalante
• 金额: $ 19.9万
• 依托单位: VIRGINIA COMMONWEALTH UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-07-01 至 2015-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8570593
• 关键词: Affect; Architecture; Binding; Biochemical; Biogenesis; Biological Assay; Cell Cycle Progression; Cell Nucleolus; Cell Proliferation; Cells; Cellular Stress; Chromatin; Chromatin Remodeling Factor; Chromatin Structure; Cockayne Syndrome; Collaborations; Complex; DNA Binding Domain; Development; Down-Regulation; Electron Microscopy; Epigenetic Process; Event; Foundations; Future; Gene Activation; Gene Expression; Gene Silencing; Genes; Genetic Transcription; Goals; Growth Factor; Hybrids; Individual; Lead; Link; MDM2 gene; Maps; Modeling; Molecular; Molecular Profiling; Montserrat; Nucleosomes; Nutrient; Oncogene Proteins; Play; Positioning Attribute; Process; Proteins; Reaction; Recombinant DNA; Recruitment Activity; Regulation; Resolution; Ribosomes; Role; Signal Transduction; Site; Solid; Structure; System; Time; Transcription Process; Transcriptional Activation; Tumor Suppressor Proteins; Up-Regulation; Work; X-Ray Crystallography; cancer cell; cancer therapy; cell growth; chromatin remodeling; design; gene synthesis; novel therapeutics; particle; prevent; promoter; protein B; protein complex; protein protein interaction; public health relevance; rRNA Genes; reconstruction; research study; termination factor; tool; transcription termination; transcription termination factor I; tumor molecular fingerprint

DESCRIPTION (provided by applicant): Transcription and processing of ribosomal RNA genes (rRNA) are intimately linked to processes that control cell growth and proliferaton. Expression of rRNA is regulated by multiple signals such as nutrient availability, growth factors and cellular stress. Not surprising, increasing evidence suggest that large changes in the up-regulation of rRNA synthesis may be one of the most important signatures of cancer cells. Transcription Terminator Factor (TTF-I) is an essential factor in rRNA transcription that also determines the overall architecture of the rDNA promoter. TTF-I orchestrates the epigenetic state of both active and silenced genes through the recruitment of different set of chromatin remodelers and modifiers. In active rRNA genes, TTF-I binds to the terminator T0 site and recruits Cockayne Sindrome Protein B (CSB) that in an ATP dependent reaction modifies the position of nucleosomes in the promoter and activates transcription of the gene. In addition, TTF-I can recruit the Nucleolus Remodeler complex (NoRC) to have the opposite effect in transcription and promotes rRNA gene silencing. Although many details about the general features of each mechanism are known, a mechanistic view of the role of TTF-I in the epigenetic regulation of rRNA genes at the atomic level is lacking. In this new R21 we proposed to develop a system to understand: 1) How TTF-I binds chromatin templates and the structural changes occurring after this initial binding and 2) How TTF-I recruits CSB and the changes that occur upon recruitment in the position of the nucleosomes. We will use a combination of functiona assays to map the interactions of TTF-I and CSB and a hybrid structural approach combining X-ray crystallography, single-particle reconstruction electron microscopy (EM) and small-angle x-ray scattering (SAXS). In addition to obtaining for the first time a detailed viw of the remodeling complexes and the changes leading to the activation of rRNA genes, the system developed in this application will lead us into future studies of gene silencing by th recruitment of the NoRC complex and the protein complexes that regulate the cellular abundance of TTF-I such as its interaction with tumor suppressors ARFp19 and MDM2. This work will be in close collaboration with Dr. Montserrat Samso that will provide expertise in single-particle reconstruction EM and Dr. Deepak Bastia that will provide technical help in the biochemical assays.

描述（由申请人提供）：核糖体RNA基因（rRNA）的转录和加工与控制细胞生长和增殖的过程密切相关。 rRNA的表达受到多种信号的调控，如营养物质的可利用性、生长 因素和细胞应激。越来越多的证据表明，rRNA合成上调的巨大变化可能是癌细胞最重要的特征之一。 转录终止因子（TTF-I）是rRNA转录的重要因子，也决定了rDNA启动子的整体结构。TTF-I通过募集不同组的染色质重塑剂和修饰剂来协调活性基因和沉默基因的表观遗传状态。 在活性rRNA基因中，TTF-I与终止子T0位点结合并募集Cockayne Sindrome蛋白B（CS B），CS在ATP依赖性反应中修饰核小体在启动子中的位置并激活基因转录。 此外，TTF-I可以募集核仁重塑复合物（NoRC）在转录中具有相反的作用，并促进rRNA基因沉默。虽然每个机制的一般特征的许多细节是已知的，TTF-I在rRNA基因的表观遗传调控中的作用在原子水平上的机制观点是缺乏的。 在这个新的R21中，我们提出开发一个系统来理解：1）TTF-I如何结合染色质模板以及在这种初始结合后发生的结构变化，以及2）TTF-I如何招募CSB以及在核小体位置招募时发生的变化。 我们将使用功能分析的组合来绘制TTF-I和CSB的相互作用，以及结合X射线晶体学，单粒子重构电子显微镜（EM）和小角度X射线散射（SAXS）的混合结构方法。 除了首次获得重塑复合物的详细视图和导致rRNA基因激活的变化外，本申请中开发的系统将引导我们通过募集NoRC复合物和调节TTF细胞丰度的蛋白质复合物来进行未来的基因沉默研究-如与肿瘤抑制因子ARFp 19和MDM 2的相互作用。 这项工作将与Montserrat Samso博士密切合作，该博士将提供单粒子重建EM方面的专业知识，Deepak Bastia博士将提供生化分析方面的技术帮助。