DNA Demethylation and Muller Glia Reprogramming During Retina Regeneration

视网膜再生过程中 DNA 去甲基化和米勒胶质细胞重编程

• 批准号: 8502787
• 负责人: DANIEL J GOLDMAN
• 金额: $ 18.84万
• 依托单位: UNIVERSITY OF MICHIGAN AT ANN ARBOR
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-04-01 至 2015-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8502787
• 关键词: Animals; Antisense Oligonucleotides; Automobile Driving; Birds; Blindness; Cell physiology; Cells; Code; CpG dinucleotide; DNA; DNA Methylation; DNA Sequence; Deaminase; Development; Disease; Epigenetic Process; Exhibits; Eye Injuries; Eye diseases; Failure; Fishes; Fluorescence-Activated Cell Sorting; Gene Expression; Gene Expression Profiling; Gene Silencing; Generations; Genes; Genetic Materials; Genetic Programming; Genome; Genomics; Histones; Human; Inherited; Injury; Libraries; Location; Mammals; Methylation; Microarray Analysis; Multipotent Stem Cells; Natural regeneration; Neuroglia; Neurons; Organism; Population; Process; Proliferating; Proteins; Retina; Retinal; Role; Site; Somatic Cell; System; Tail; Testing; Transcriptional Regulation; Transgenic Organisms; Variant; Vision; Work; X Inactivation; Zebrafish; bisulfite; cell type; demethylation; embryonic stem cell; imprint; induced pluripotent stem cell; injured; knock-down; novel; novel strategies; prevent; programs; public health relevance; regenerative; repaired; retinal progenitor cell; teleost fish

DESCRIPTION (provided by applicant): Unlike mammals, zebrafish are able to regenerate a damaged retina and restore lost sight. This regenerative ability depends on Muller glia (MG) that respond to retinal injury by undergoing multiple shifts in identity as they dedifferentiate, proliferate, and finally differentiate to regenerate new neurons and glia. Although MG can be coaxed to proliferate in the injured mammalian retina, they do not exhibit multipotency and only rarely regenerate damaged neurons. Therefore understanding the mechanisms driving zebrafish MG reprogramming to mutlipotency may suggest novel strategies for generating multipotent progenitors from mammalian MG. Recent studies suggest that MG reprogramming is accompanied by activation of gene expression programs that are similar to those acting in embryonic stem cells and retinal progenitors. We hypothesize that genetic programs driving MG dedifferentiation and multipotency are controlled by DNA methylation. In animals, DNA methylation predominantly occurs at CpG dinucleotides and controls transcriptional regulatory processes like imprinting, X-chromosome inactivation, transposon silencing, and stable silencing of gene activity. Methylation of DNA proximal to gene-coding regions is correlated with gene silencing. Importantly, changes in DNA methylation have been correlated with the activation and suppression of gene expression programs that take place during early development and accompany the reprogramming of somatic cells to yield induced pluripotent stem cells. It is likely that erasure and reestablishment of genomic methylation, at key locations, accompanies the gene expression changes that drive MG dedifferentiation and multipotency and subsequently the regeneration of new retinal cell types. Here we propose to identify regions of the MG genome that are undergoing methylation changes during retina regeneration and determine if these changes correlate with gene expression changes that have previously been characterized using microarray technology. In addition, we propose to test the hypothesis that DNA demethylation in dedifferentiating MG is an active process driven by Apobec2a and 2b proteins.

描述（由申请人提供）：与哺乳动物不同，斑马鱼能够再生受损的视网膜并恢复失去的视力。这种再生能力取决于Muller胶质细胞（MG），其通过经历身份的多次转变来响应视网膜损伤，因为它们去分化，增殖，并最终分化以再生新的神经元和胶质细胞。虽然MG可以被诱导在受损的哺乳动物视网膜中增殖，但它们不表现出多能性，并且很少再生受损的神经元。因此，了解驱动斑马鱼MG重编程为多能性的机制可能会建议从哺乳动物MG产生多能祖细胞的新策略。最近的研究表明，MG重编程伴随着基因表达程序的激活，这些程序与胚胎干细胞和视网膜祖细胞中的基因表达程序相似。我们假设驱动MG去分化和多能性的遗传程序由DNA甲基化控制。在动物中，DNA甲基化主要发生在CpG二核苷酸处，并控制转录调控过程，如印记、X染色体失活、转座子沉默和基因活性的稳定沉默。基因编码区附近的DNA甲基化与基因沉默相关。重要的是，DNA甲基化的变化与早期发育过程中发生的基因表达程序的激活和抑制相关，并伴随体细胞的重编程以产生诱导多能干细胞。很可能在关键位置，基因组甲基化的消除和重建， 伴随着基因表达的变化，驱动MG去分化和多能性，并随后再生新的视网膜细胞类型。在这里，我们建议确定MG基因组的区域，在视网膜再生过程中发生甲基化变化，并确定这些变化是否与基因表达的变化，以前已经使用微阵列技术的特点。此外，我们建议测试的假设，即DNA去甲基化在去分化MG是一个积极的过程中驱动的Apobec2a和2b蛋白。