Genetic Basis of Signaling Heterogeneity in Human Follicular Lymphoma

人滤泡性淋巴瘤信号异质性的遗传基础

• 批准号: 8444348
• 负责人: RONALD LEVY
• 金额: $ 45.97万
• 依托单位: STANFORD UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-04-01 至 2016-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8444348
• 关键词: Antigens; B-Lymphocytes; Biology; Cell Separation; Cells; Clinical; Clonal Evolution; Clonal Expansion; Collection; Common Neoplasm; Complement; DNA; DNA Resequencing; DNA Sequence; DNA analysis; DNA copy number; Data; Diagnosis; Disease; Elements; Etiology; Follicular Lymphoma; Gene Expression; Genes; Genetic; Heavy-Chain Immunoglobulins; Heterogeneity; Human; Individual; Indolent; Knowledge; Lead; Malignant - descriptor; Malignant Neoplasms; Methods; Modeling; Molecular Profiling; Mutation; Pathway interactions; Patients; Pattern; Phenotype; Phosphoric Monoester Hydrolases; Phylogenetic Analysis; Plant Roots; Population; Primary Neoplasm; Receptor Signaling; Receptors, Antigen, B-Cell; Recurrence; Sampling; Signal Pathway; Signal Transduction; Signaling Pathway Gene; Somatic Mutation; Sorting - Cell Movement; Specimen; T-Lymphocyte; Technology; Testing; Time; Trees; Variant; base; chemotherapy; comparative; genetic analysis; genome-wide; member; neoplastic cell; next generation; novel; primitive cell; progenitor; prognostic; public health relevance; response; tumor; variable region gene

DESCRIPTION (provided by applicant): Follicular lymphoma (FL) is generally an incurable disease. In each case the tumor is composed of a clonal population of B cells with a unique B cell antigen receptor (BCR). We have recently discovered that at the time of diagnosis, each FL tumor contains a subpopulation of tumor cells that has defective signaling through its B cell antigen receptor (1). The size of this BCR insensitive tumor subpopulation expands over time, and it predicts poor response to chemotherapy and a shorter overall survival. Thus, we pose the question "what is the relationship between the two subpopulations of tumor cells in follicular lymphoma- the BCR sensitive and the BCR insensitive?" We postulate several models:1. The BCR insensitive population arises from the BCR sensitive population, 2. Each of the two tumor subpopulations arises from a common but rare tumor-initiating cell, or 3. The BCR insensitive population is the more primitive cell that initially gives rise to the dominant BCR sensitive population but eventually dominates due to negative selective forces of antigenic stimulation or differential sensitivity to therapy. We will distinguish between these hypotheses by separating the two subpopulations of tumor cells from individual cases and by performing comparative genetic analyses on the respective pairs. We will clone and sequence the VDJ region genes from each subpopulation and examine their patterns of V region somatic mutations. By comparing their respective evolutionary paths we will infer the clonal relationships between the BCR sensitive and BCR insensitive subpopulations. In a second approach we will compare the global patterns of DNA gains and losses between the two tumor subpopulations and identify the changes unique to each. All tumor cells should share the driver DNA gains and losses with the progenitor tumor cell; additional gains and losses should reveal how the two subpopulations evolved in relation to each other. Finally, we will search for the root cause of BCR insensitivity in each case. Using next generation DNA sequencing technology, we will conduct large scale deep resequencing of genes of the BCR signaling pathway. We expect to find mutations in the proximal members of the pathway. In order to discover other differences between BCR sensitive and BCR insensitive tumor cell subsets we will compare their gene expression profiles.

描述（由申请人提供）：滤泡性淋巴瘤（FL）通常是一种不治之症。在每种情况下，肿瘤由具有独特B细胞抗原受体（BCR）的B细胞克隆群组成。我们最近发现，在诊断时，每个FL肿瘤都含有一个肿瘤细胞亚群，该亚群通过其B细胞抗原受体具有缺陷信号传导（1）。这种BCR不敏感的肿瘤亚群的大小随时间而扩大，并且它预测对化疗的反应较差和总生存期较短。因此，我们提出的问题是“什么是滤泡性淋巴瘤的两个肿瘤细胞亚群之间的关系-BCR敏感和BCR不敏感？“我们假设几个模型：1. BCR不敏感人群来自BCR敏感人群，2。两个肿瘤亚群中的每一个都来自一个常见但罕见的肿瘤起始细胞，或3。BCR不敏感群体是更原始的细胞，其最初产生显性BCR敏感群体，但由于抗原刺激的负选择力或对治疗的差异敏感性而最终占主导地位。我们将区分这些假设，通过分离两个亚群的肿瘤细胞从个别情况下，并进行比较遗传分析对各自的对。我们将克隆和测序VDJ区基因从每个亚群，并检查其模式的V区体细胞突变。通过比较它们各自的进化路径，我们将推断出BCR敏感和BCR不敏感亚群之间的克隆关系。在第二种方法中，我们将比较两种肿瘤亚群之间DNA获得和损失的全球模式，并确定每个亚群的独特变化。所有肿瘤细胞都应该与肿瘤祖细胞共享驱动DNA的获得和损失;额外的获得和损失应该揭示两个亚群如何相互进化。最后，我们将在每种情况下寻找BCR不敏感的根本原因。利用新一代DNA测序技术，我们将对BCR信号通路的基因进行大规模的深度测序。我们希望在通路的近端成员中发现突变。为了发现BCR敏感和BCR不敏感肿瘤细胞亚群之间的其他差异，我们将比较它们的基因表达谱。