Chromatin Domain Dynamics

染色质域动力学

• 批准号: 8416973
• 负责人: Rohinton T. Kamakaka
• 金额: $ 28.73万
• 依托单位: UNIVERSITY OF CALIFORNIA SANTA CRUZ
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-03-01 至 2015-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8416973
• 关键词: Address; Affect; Area; Beryllium; Binding; Biochemical; Biological Assay; Biology; Carbon; Cell Cycle; Cell Nucleus; Cell division; Cells; Chromatin; Chromatin Structure; Chromosomes; Complex; DNA; DNA Polymerase II; DNA Polymerase III; DNA biosynthesis; Data; Defect; Development; Disease; Dissection; Drosophila genus; Elements; Funding; Gene Expression Regulation; Gene Silencing; Genes; Genetic Screening; Genetic Transcription; Genome; Genomics; Goals; Grant; Histones; Human; Human Activities; Inherited; Insulator Elements; Lead; Maintenance; Mediating; Medicine; Molecular; Molecular Conformation; Molecular Genetics; Mus; Nuclear; Play; Postdoctoral Fellow; Process; Progress Reports; Property; Proteins; Regulation; Regulatory Element; Repression; Research; Research Personnel; Role; Site; Structure; Techniques; Transcriptional Silencer Elements; Yeasts; base; chromatin immunoprecipitation; gene repression; gene therapy; genome wide association study; graduate student; interest; mutant; promoter; public health relevance; tool; transcription factor; transcription factor TFIIIC; undergraduate student

DESCRIPTION (provided by applicant): The DNA in the nucleus is complexed with proteins to form chromatin and chromatin domains of variable accessibility reside in specific regions of the nucleus. This packaging and organization is important for normal chromosomal processes like transcription and disruption of this organization is known to lead to developmental defects and disease states. The overall objective of this proposal is to reach a mechanistic understanding of the structure and organization of chromatin domains in eukaryotic chromosomes. DNA elements are necessary for the formation of chromatin domains and these elements also function to organize the domains within the three-dimensional context of the nucleus. Understanding long-range interactions between DNA elements and their role in the dynamics of chromatin domain is one focus of this proposal. The final goal is to understand how chromatin bound factors and DNA elements influence chromatin structure thereby affecting processes such as transcription. Adjacent chromatin domains in the nucleus often have antagonistic structural or functional properties and DNA insulator elements separate these domains. Promoters of specific genes often function as insulators in yeast and Drosophila and we have determined the broad outlines of the mechanisms by which these insulators function in yeast. In this grant we propose to investigate the changes that occur in chromatin domains as cells divide and to determine if similar mechanisms operate to separate chromatin domains in human cells. The research will involve use of molecular genetics and genomics, manipulation of chromatin using techniques like quantitative chromatin immunoprecipitations, and chromosome conformation capture and biochemical analysis. Understanding how the nucleus is organized should help us better manipulate processes for benefit in research. The results from this study will be useful in understanding the molecular basis of disease states that arise from mis-regulation of chromatin domains. The results will also enable researchers to develop new strategies for treating disease states by developing new molecular tools for gene therapy.

描述（由申请人提供）：细胞核中的DNA与蛋白质复合形成染色质，可变可接近性的染色质结构域位于细胞核的特定区域。这种包装和组织对于正常的染色体过程如转录和破坏这种组织是重要的，已知会导致发育缺陷和疾病状态。这个建议的总体目标是达到在真核细胞染色体中的染色质结构域的结构和组织的机械理解。 DNA元件对于染色质结构域的形成是必需的，并且这些元件还起到在细胞核的三维环境中组织结构域的作用。理解DNA元件之间的长程相互作用及其在染色质结构域动力学中的作用是该提议的焦点之一。最终目标是了解染色质结合因子和DNA元件如何影响染色质结构，从而影响转录等过程。 细胞核中相邻的染色质结构域通常具有拮抗的结构或功能特性，并且DNA绝缘子元件将这些结构域分开。在酵母和果蝇中，特定基因的启动子通常起到绝缘子的作用，我们已经确定了这些绝缘子在酵母中发挥作用的机制的大致轮廓。在这项研究中，我们打算调查细胞分裂时染色质结构域发生的变化，并确定是否有类似的机制在人类细胞中分离染色质结构域。 该研究将涉及分子遗传学和基因组学的使用，使用定量染色质免疫沉淀等技术操纵染色质，以及染色体构象捕获和生化分析。 了解细胞核是如何组织的应该有助于我们更好地操纵过程，以利于研究。这项研究的结果将有助于理解由染色质结构域的错误调节引起的疾病状态的分子基础。研究结果还将使研究人员能够通过开发新的基因治疗分子工具来开发治疗疾病的新策略。