Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
批准号:
8741959
负责人:
Rebecca S Jacobson
金额:
$62.61万
依托单位国家:
美国
项目类别:
财政年份:
2013
资助国家:
美国
项目状态:
已结题
起止时间:
2013-09-25 至 2018-07-31
关键词:
Advanced DevelopmentAgreementArchivesAuthorization documentationAutomobile DrivingBiological AssayBiological MarkersBiological ModelsCancer CenterCancer PatientCancer Research NetworkCollaborationsComputer softwareConsentDataDevelopmentDiseaseFeedbackFormalinGrantHealth SciencesHumanImageImageryIndividualInformaticsInstitutionInstitutional Review BoardsInterviewMalignant NeoplasmsMalignant neoplasm of liverMalignant neoplasm of ovaryMalignant neoplasm of urinary bladderManagement AuditMeasuresMedicineMethodsModelingMolecularMolecular AnalysisNatural Language ProcessingParaffinParaffin EmbeddingPatient CarePatientsPennsylvaniaPhenotypePilot ProjectsPoliciesPrincipal InvestigatorPrivacyProcessProductionProductivityRecruitment ActivityRegistriesResearchResearch PersonnelResourcesReverse Transcriptase Polymerase Chain ReactionRoswell Park Cancer InstituteSecurityServicesSiteSlideSpecimenSpeedStructureSurveysSystemTimeTissue MicroarrayTissuesTranslational ResearchTrustUniversitiesValidationWorkanticancer researchcomputerized data processingdesignelectronic dataexomegenome sequencinghuman tissueimprovedmalignant breast neoplasmmelanomamembermobile applicationpublic health relevancerepositorysoftware systemstumorusabilityvirtual
中文摘要
描述(由申请人提供):存档的人体组织是转化研究的重要资源。来自癌症患者的福尔马林固定、石蜡包埋(FFPE)组织用于广泛的测定,包括RT-PCR、SNP分析、多重生物标志物、成像生物标志物、靶向外显子组、全外显子组和全基因组测序。在患者护理期间产生的剩余FFPE组织是“回顾性的”;在特定条件下使用这些组织不需要同意。对于个性化医学研究人员来说,这些样本是至关重要的资源,可以在应用于个体患者之前进行生物标志物验证,详细的分子分析和系统建模。但是,获得这些人体组织往往是癌症研究中的一个限制因素。我们建议进一步开发TIES软件,以(1)提高使用FFPE支持人类肿瘤分子表征的机构能力,(2)增加癌症中心内组织的获取,以及(3)提高癌症中心之间共享组织和相关表型数据的能力。
英文摘要
DESCRIPTION (provided by applicant): Archived human tissues are an essential resource for translational research. Formalin-fixed, paraffin-embedded (FFPE) tissues from cancer patients are used in a wide range of assays, including RT-PCR, SNP profiling, multiplex biomarkers, imaging biomarkers, targeted exome, whole exome, and whole genome sequencing. Remainder FFPE tissues generated during patient care are 'retrospective'; use of these tissues under specific conditions does not require consent. For personalized medicine researchers, these specimens are vital resources enabling biomarker validation, detailed molecular analysis, and systems modeling before application is made to individual patients. But access to these human tissues is often a rate limiting factor in cancer research. We propose advanced development of the TIES software to (1) increase institutional capacity for using FFPE to support molecular characterization of human tumors, (2) increase access to tissues within cancer centers, and (3) improve the ability to share tissues and associated phenotype data among cancer centers.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Cancer Deep Phenotype Extraction from Electronic Medical Records
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批准号:9298609
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项目类别:
-
资助金额:$18.78万
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财政年份:2014
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负责人:Rebecca S Jacobson
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依托单位:
Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
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批准号:8606937
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项目类别:
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资助金额:$68.7万
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财政年份:2013
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负责人:Rebecca S Jacobson
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依托单位:
Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
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批准号:8901082
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项目类别:
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资助金额:$63.87万
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财政年份:2013
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负责人:Rebecca S Jacobson
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依托单位:
Computational Methods for Personalized and Adaptive Cognitive Training
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批准号:7849693
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项目类别:
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资助金额:$94.56万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Computational Methods for Personalized and Adaptive Cognitive Training
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批准号:7523638
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项目类别:
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资助金额:$95.63万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Continued Development and Evaluation of caTIES
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批准号:7749583
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项目类别:
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资助金额:$31.44万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Pittsburgh Biomedical Informatics Training Program
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批准号:7870852
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项目类别:
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资助金额:$104.16万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Continued Development and Evaluation of caTIES
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批准号:8403841
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项目类别:
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资助金额:$28.66万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Continued Development and Evaluation of caTIES
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批准号:7558128
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项目类别:
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资助金额:$31.44万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Continued Development and Evaluation of caTIES
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批准号:7999244
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项目类别:
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资助金额:$30.49万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Continued Development and Evaluation of caTIES
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批准号:8197903
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项目类别:
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资助金额:$30.49万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
Computational Methods for Personalized and Adaptive Cognitive Training
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批准号:8089164
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项目类别:
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资助金额:$10.0万
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财政年份:2009
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负责人:Rebecca S Jacobson
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依托单位:
The ODIE Toolkit - Software for Information Extraction and Biomedical Ontology De
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批准号:7896739
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项目类别:
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资助金额:$42.79万
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财政年份:2007
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负责人:Rebecca S Jacobson
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依托单位:
The ODIE Toolkit - Software for Information Extraction and Biomedical Ontology De
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批准号:7360352
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项目类别:
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资助金额:$57.04万
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财政年份:2007
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负责人:Rebecca S Jacobson
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依托单位:
The ODIE Toolkit - Software for Information Extraction and Biomedical Ontology De
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批准号:7500835
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项目类别:
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资助金额:$55.11万
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财政年份:2007
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负责人:Rebecca S Jacobson
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依托单位:
The ODIE Toolkit - Software for Information Extraction and Biomedical Ontology De
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批准号:7669420
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项目类别:
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资助金额:$56.48万
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财政年份:2007
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负责人:Rebecca S Jacobson
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依托单位:
An Intelligent Melanoma Diagnostic Training System
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批准号:6671640
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项目类别:
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资助金额:$23.25万
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财政年份:2003
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负责人:Rebecca S Jacobson
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依托单位:
An Intelligent Melanoma Diagnostic Training System
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批准号:6940801
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项目类别:
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资助金额:$22.5万
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财政年份:2003
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负责人:Rebecca S Jacobson
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依托单位:
The Cancer Training Web -- A Multi-Institutional Tutoring System in Pathology
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批准号:8132997
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项目类别:
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资助金额:$31.87万
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财政年份:2003
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负责人:Rebecca S Jacobson
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依托单位:
The Cancer Training Web -- A Multi-Institutional Tutoring System in Pathology
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批准号:7207869
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项目类别:
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资助金额:$29.73万
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财政年份:2003
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负责人:Rebecca S Jacobson
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依托单位:
海外基金