Defining relevant targets of the DNA dependent protein kinase

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DESCRIPTION (provided by applicant): DNA double stranded-breaks (DSBs) are thought to be the most dangerous DNA lesions that threaten genomic integrity. In vertebrates, the classical non-homologous end joining pathway (c-NHEJ) joins most DSBs in all cell types and at all stages of the cell cycle. Not surprisingly, intact c-NHEJ is essential for human life. Disruption o c-NHEJ in somatic cells results in genomic instability and is strongly associated with tumorigenesis. Paradoxically, strategies for disrupting c-NHEJ, may have several potentially important therapeutic applications. Thus, a solid understanding of this pathway is important to human health. Although c-NHEJ has been studied for decades, more basic research is warranted because our knowledge of c-NHEJ is not only incomplete, but may also be inaccurate. The current research focuses on three areas. The first will ascertain mechanistic details of how phosphorylations mediated by the DNA dependent protein kinase (DNA-PK) regulate DNA repair. DNA-PK is a large protein kinase complex that initiates DNA repair. It targets (by protein phosphorylation) all of the c-NHEJ factors including itself. This autophosphorylation is essential for repair and is functionally complex. The second area of research will focus on emerging data demonstrating how DNA-PK affects other DNA repair pathways. c-NHEJ should not join certain types of DNA damage; one example of damage that c-NHEJ should preferably avoid is the damage that results during DNA replication when a replication fork collapses. The second aim will determine whether DNA-PK promotes cell survival during replication stress at the expense of genome integrity. The third aim follows up on recent novel findings showing how XRCC4 and XLF [two factors previously ascribed to c-NHEJ's ligation complex, and thus factors that function late in c-NHEJ] form filamentous structures that bridge DNA in vitro, and that may function in living cells to stabilize DNA ends prior to repair. This suggests an additional, early (in c-NHEJ) role for XRCC4/XLF filaments. This would be a significant shift from current dogma.