Gene Ontology Consortium

基因本体联盟

• 批准号: 8641714
• 负责人: Judith A Blake
• 金额: $ 375.69万
• 依托单位: JACKSON LABORATORY
• 依托单位国家: 美国
• 财政年份: 2001
• 资助国家: 美国
• 起止时间: 2001-01-19 至 2017-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8641714
• 关键词: Adopted; Anatomy; Animal Model; Area; Back; Bioinformatics; Biological; Biological Process; Biology; Chemicals; Classification; Collaborations; Communities; Complex; Computer software; Data; Databases; Development; Disease Outcome; Ensure; Environment; Functional RNA; Galaxy; Gene Proteins; Genes; Genetic; Genome; Genomics; Guidelines; Health; Human; International; Java; Knowledge; Light; Literature; Maps; Metric; Molecular; Ontology; Organ; Organism; Pathway interactions; Plug-in; Practice Guidelines; Proteins; Provider; Public Health; Quality Control; Research; Research Personnel; Resources; Role; Semantics; Services; Standardization; Structure; Students; System; Systems Biology; Technology; Terminology; Trees; Web Ontology Language; Work; base; biological research; biomedical ontology; cell type; genome annotation; information model; interest; model organisms databases; molecular domain; public health relevance; tool; web services

DESCRIPTION (provided by applicant): Our objective is to provide the scientific community with a consistent, robust information environment for describing, sharing, integrating and comparing the functional roles of genes, proteins and functional RNAs within and across all organisms. The Gene Ontology (GO) Consortium is an international collaboration of model organism database and genome annotation groups who have joined together to establish standards for describing gene products, to provide tools and support for the consistent application of these standards for functional annotations, and to contribute to a central bioinformatics resource to integrate and share these annotations to facilitate and enable biological research. The GO provides specific classifications consisting of well-defined, biologically descriptive terms for the domains of, molecular function, biological process and cellular component. The GO classifications are independent of a particular technology, an uncoupling of terminology from technology that encourages application of these semantic standards by organism annotation groups that utilize a wide range of technical environments. The GO has been widely adopted and used for representation of complex biological information for model organism genomes, and is increasingly used for the functional annotation of emerging genomes. With the increased use of the GO, the Consortium must actively work to ensure both the consistency and quality of annotations as well as accuracy of the ontologies so that these resources may be reliably used to draw inferences and make biological predictions. We will do so by focusing on six key aims: 1) We will provide experimental functional annotations for human and major model organisms; 2) We will extend the GO into emerging genome annotation communities and for key biological domains; 3) We will enable phylogenetically-based propagation of annotations; 4) We will develop a Common Annotation Framework; 5) We will maintain and upgrade the Gene Ontologies, and 6) We will provide annotations and ontologies to the broad genetics community, thus supporting experimental biologists, genome informaticists, and computational biologists who are using GO annotations and ontologies in their research. PUBLIC HEALTH RELEVANCE: The relevance of this work for public health Is that comprehensive integration and standardization of biomedical and genomics information, such as accomplished by the Gene Ontology Consortium, is an essential component of advancing the understanding of the molecular basis underlying human health and disease outcomes.

描述(由申请人提供)：我们的目标是为科学界提供一个一致的、强大的信息环境，用于描述、共享、整合和比较所有生物体内和跨生物体的基因、蛋白质和功能RNA的功能角色。基因本体论(GO)联盟是一个由模式生物数据库和基因组注释小组组成的国际合作组织，他们联合起来建立描述基因产品的标准，为这些标准在功能注释中的一致应用提供工具和支持，并为整合和共享这些注释以促进和使生物学研究成为可能的中央生物信息学资源做出贡献。GO提供了具体的分类，包括分子功能、生物过程和细胞成分领域的定义明确的生物描述性术语。GO分类独立于特定技术，这是一种术语与技术的分离，鼓励利用广泛技术环境的有机体注释组应用这些语义标准。GO已被广泛采用并用于模式生物基因组的复杂生物信息的表示，并越来越多地被用于新兴基因组的功能注释。随着围棋使用的增加，联盟必须积极工作，确保注释的一致性和质量以及本体的准确性，以便这些资源可以可靠地用于推断和做出生物学预测。我们将通过关注六个主要目标来做到这一点：1)我们将为人类和主要模式生物提供实验性的功能注释；2)我们将把GO扩展到新兴的基因组注释社区和关键的生物学领域；3)我们将使基于系统发育的注释得以传播；4)我们将开发一个通用的注释框架；5)我们将维护和升级基因本体；6)我们将向广泛的遗传学社区提供注释和本体，从而支持在研究中使用GO注释和本体的实验生物学家、基因组信息学家和计算生物学家。 与公共健康的相关性：这项工作与公共健康的相关性在于，生物医学和基因组学信息的全面整合和标准化，如由基因本体论联盟完成的，是促进对人类健康和疾病后果的分子基础的理解的重要组成部分。