Retroviral capsid recognition by TRIM5alpha restriction factors

TRIM5alpha 限制因子识别逆转录病毒衣壳

• 批准号: 8732420
• 负责人: DMITRI N IVANOV
• 金额: $ 33.12万
• 依托单位: UNIVERSITY OF TEXAS HLTH SCIENCE CENTER
• 依托单位国家: 美国
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-02-01 至 2019-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8732420
• 关键词: Accounting; Acquired Immunodeficiency Syndrome; Affect; Affinity; Amino Acids; Anti-Retroviral Agents; Binding; Biological Assay; C-terminal; Capsid; Capsid Proteins; Cells; Charge; Chemicals; Complex; Computing Methodologies; Defect; Docking; Epitopes; Evolution; Genetic Materials; Genome; Goals; HIV; Human; Human Activities; Infection; Intervention; Knowledge; Light; Macaca mulatta; Maps; Measurement; Measures; Mediating; Modeling; Molecular; Mutagenesis; Mutation; NMR Spectroscopy; Natural Immunity; Organism; Pan Genus; Prevention; Primate Lentiviruses; Primates; Property; Proteins; Race; Refractory; Research; Research Proposals; Resolution; Retroviridae; Reverse Transcription; SIV; Specificity; Spectrum Analysis; Structure; Surface; TRIM Gene; Testing; Titrations; Tropism; Ursidae Family; Variant; Viral; X-Ray Crystallography; arm; base; biophysical techniques; computerized tools; insight; molecular dynamics; novel; pandemic disease; pathogen; public health relevance; restraint; retroviral-mediated; success; virus genetics

DESCRIPTION: TRIM?? restriction factors bind retroviral capsids after cell entry and restrict retroviral infection by blocking reverse transcription and/or integration of the viral genetic material. The C-terminal SPRY domain of TRIM?? is believed to form most of the capsid-TRIM?? interface as species-specific sequence variations within the SPRY domain account for differences in the viral specificity of the TRIM??-mediated restriction. Most notably, recent evolution of the human TRIM?? SPRY resulted in the variant that has poor affinity for the HIV capsid, the vulnerability that contributed to the emergence of the AIDS pandemic when the simian immunodeficiency virus (SIV) passed from chimpanzees into a human host. Mutation or deletion of a single amino acid residue (R332) within the SPRY domain restores HIV restriction by the human TRIM?? variant. TRIM?? SPRY domains have proven refractory to structural and biophysical studies limiting our understanding of retroviral capsid recognition by TRIM??. This research proposal seeks to fill that knowledge gap by solving the structures of several primate TRIM?? SPRY variants with distinct retroviral specificities and characterizing their interactions with the cognate retroviral capsids. The goal of the proposed research is to understand the mechanism of capsid recognition by TRIM?? restriction factors, elucidate why the human TRIM?? variant is not potent against HIV and to explore whether this defect could be alleviated by pharmacological or other means. The following three specific aims will be pursued: (1) The structures of the rhesus, human and possibly other TRIM?? SPRY domains will be solved using a novel experimental approach that combines NMR spectroscopy and X-ray crystallography. (2) Interaction of several SPRY-capsid pairs will be characterized using a variety of biophysical approaches. (3) High-resolution models of the SPRY-capsid complexes will be generated using computational methods and tested using mutagenesis and restriction assays.

描述：TRIM？？限制因子在进入细胞后结合逆转录病毒衣壳，并通过阻断逆转录和/或病毒遗传物质的整合来限制逆转录病毒感染。TRIM蛋白C端SPRY结构域的研究据信构成了大部分的capture-TRIM？？SPRY结构域内的物种特异性序列变异导致TRIM的病毒特异性差异。介导的限制。最值得注意的是，最近人类TRIM的进化？？SPRY导致了对HIV衣壳亲和力差的变体，当猿免疫缺陷病毒（SIV）从黑猩猩传播到人类宿主时，这种脆弱性导致了艾滋病大流行的出现。SPRY结构域中单个氨基酸残基（R332）的突变或缺失恢复了人类TRIM？变量。TRIM？？SPRY结构域已被证明难以进行结构和生物物理研究，限制了我们对TRIM？？识别逆转录病毒衣壳的理解。这项研究计划旨在通过解决几种灵长类动物TRIM？？SPRY变体具有不同的逆转录病毒特异性，并表征其与同源逆转录病毒衣壳的相互作用。该研究的目的是了解TRIM识别衣壳的机制？？限制因子，阐明为什么人类TRIM？？因此，本研究旨在探讨是否可以通过药理学或其他手段缓解这种缺陷。以下三个具体目标将被追求：（1）恒河猴，人类和可能的其他TRIM的结构？SPRY域将使用一种新的实验方法，结合NMR光谱和X射线晶体学解决。(2)几个SPRY-衣壳对的相互作用将使用多种生物物理方法表征。(3)SPRY-衣壳复合物的高分辨率模型将使用计算方法生成，并使用诱变和限制性测定进行测试。