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Development of a functional genomics toolbox for schistosome parasites

血吸虫寄生虫功能基因组学工具箱的开发

基本信息

批准号：
8424223
负责人：
DAVID LEE WILLIAMS
金额：
$ 19.13万
依托单位：
RUSH UNIVERSITY MEDICAL CENTER
依托单位国家：
美国
项目类别：
财政年份：
2012
资助国家：
美国
起止时间：
2012-02-15 至 2014-01-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8424223
关键词：
Affect Animal Model Animals Area Biochemical Biological Biological Process Biology Cessation of life Cestoda Chromosome Mapping Communities Complement Country Databases Development Disease Drug Targeting Feces Female Fresh Water Gene Expression Gene Expression Regulation Genes Genetic Genomics Goals Granuloma Guilt Human Image Individual Infection Investigation Laboratory Infection Life Life Style Maintenance Methodology Methods Modeling Monitor Morbidity - disease rate Mus Natural regeneration Organ Orthologous Gene Parasitic Diseases Pathology Pathway interactions Pharmaceutical Preparations Planarians Platyhelminths Process Production Protein Analysis Proteins RNA Interference Reproductive Biology Research Research Proposals Schistosoma Schistosoma japonicum Schistosoma mansoni Schistosome Parasite Schistosomiasis Sexual Development Snails Stimulus Symptoms Techniques Tissues Transcript Trematoda Turbellaria Urine Whole Organism Work comparative drug development egg functional genomics gene function genome sequencing hatching human disease male mortality neglect protein function reproductive response tool transmission process vaccine candidate vaccine development

项目摘要

DESCRIPTION (provided by applicant): Schistosomiasis is an important tropical parasitic human disease. Although an effective anti-schistosome drug is in use, it is estimated that 200 million people are infected, 20 million individuals suffer severe disease symptoms, and 280,000 people die annually from schistosomiasis. Although the genome sequences of Schistosoma mansoni and S. japonicum have been determined, most predicted genes encode proteins with unknown function. In order to make full use of the genome sequence databases it is imperative to develop efficient and reproducible functional genomic tools. In this application we propose to develop moderate throughput imaging methodologies that will enable tissue expression localization of a gene. Because of the importance of the worm egg in transmission of the lifecycle and pathology of schistosomiasis, this proposal focuses on expression localization of genes involved in reproductive biology of the worm, which we have identified in a transcriptional analysis of worm development. By co-localizing genes of unknown function with genes with known functions we will be able to understand their functions and to develop protein interacting networks. Parasitic flatworms require a host to complete their lifecycles and have generally poorly developed functional genomic tools. Therefore, we will determine if a free living flatworm with a well-developed functional genomic toolbox, Schmidtea mediterranea, can be used to investigate fundamental processes in parasitic flatworms. Our long-term goals are to identify new drug targets and vaccine candidates for schistosomiasis control.

描述（由申请人提供）：血吸虫病是一种重要的热带寄生虫性人类疾病。虽然一种有效的抗血吸虫病药物正在使用中，但据估计，每年有2亿人感染，2000万人患有严重的疾病症状，28万人死于血吸虫病。虽然曼氏血吸虫和曼氏血吸虫的基因组序列已被克隆。日本血吸虫的基因中，大多数预测的基因编码功能未知的蛋白质。为了充分利用基因组序列数据库，开发高效、可重复的功能基因组工具势在必行。在此应用中，我们提出开发中等通量成像方法，这将使组织表达定位的基因。由于虫卵在血吸虫病的生命周期和病理学传播中的重要性，该建议侧重于涉及蠕虫生殖生物学的基因的表达定位，我们已经在蠕虫发育的转录分析中确定了这些基因。通过将未知功能的基因与已知功能的基因共定位，我们将能够理解它们的功能并开发蛋白质相互作用网络。寄生性扁形虫需要宿主来完成其生命周期，并且通常发育不良的功能性基因组工具。因此，我们将确定一个自由生活的扁形虫与一个发达的功能基因组工具箱，Schmidtea mediterranea，可以用来调查寄生扁形虫的基本过程。我们的长期目标是确定控制血吸虫病的新药物靶点和候选疫苗。