Role of Polycomb-mediated epigenetic regulation in diffuse large B cell lymphoma

Polycomb 介导的表观遗传调控在弥漫性大 B 细胞淋巴瘤中的作用

• 批准号: 8416315
• 负责人: ANN J FEENEY
• 金额: $ 18.95万
• 依托单位: SCRIPPS RESEARCH INSTITUTE, THE
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-02-01 至 2015-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8416315
• 关键词: Accounting; Affect; Affinity; Alleles; B cell differentiation; B-Lymphocyte Subsets; B-Lymphocytes; Binding; Biological; Catalytic Domain; Cell Line; ChIP-seq; Complex; DNA; DNA Methylation; Development; Disease; Drosophila genus; Epigenetic Process; Follicular Lymphoma; Frequencies; Gene Expression; Gene Expression Profile; Gene Silencing; Gene Targeting; Genes; Genetic Transcription; Genotype; Histones; Homologous Gene; Human; Lymphoma; Lymphomagenesis; Lysine; Malignant - descriptor; Malignant Neoplasms; Mediating; Memory B-Lymphocyte; Methylation; Methyltransferase; Modification; Molecular Profiling; Molecular Target; Mutate; Mutation; Non-Hodgkin' s Lymphoma; PRC1 Protein; Pathogenesis; Pathway interactions; Pattern; Polycomb; Post-Translational Protein Processing; Proteins; Recruitment Activity; Regulation; Regulator Genes; Repression; Rest; Role; Sampling; Staging; Structure of germinal center of lymph node; Tonsil; Tumor Suppressor Genes; Tumor Suppressor Proteins; Ubiquitination; Ursidae Family; cancer type; cell type; functional group; histone methyltransferase; insight; large cell Diffuse non-Hodgkin' s lymphoma; mutant; neoplastic cell; novel; paralogous gene; uH2A; ubiquitin-protein ligase

DESCRIPTION (provided by applicant): It has become increasingly clear that the pathogenesis of many forms of cancer have a significant epigenetic component. Many cancer types are characterized by gene inactivation, and genes can be silenced through epigenetic mechanisms such as DNA methylation and/or the acquisition of repressive histone 3 modifications such as the methylation of lysines 27 or 9. Methylation of H3K27 is catalyzed by the Polycomb protein Ezh2, the catalytic component of Polycomb Repressive Complex 2 (PRC2). Recently, a specific mutation in the catalytic site of Ezh2 that hyperactivates its H3K27me3 methyltransferase activity while eliminating its ability to monomethylate H3K27 been detected with high frequency in one specific subtype of cancer: the germinal center (GC) B cell subtype of diffuse large B cell lymphoma (GCB-DLBCL). This hyperactive Ezh2 mutation is not present in any other types of lymphomas examined, suggesting that it may be uniquely relevant for GCB- DLBCL lymphomagenesis. Ezh2 transcription is repressed in naove B cells, but it is upregulated in GC B cells. We hypothesize that Ezh2 expression is normally increased at this stage to repress a specific subset of genes that must be downregulated to allow the differentiation of a naove B cell into a GC B cell, and of a GC B cell into a post-GC B cell. Once Ezh2 methylates H3K27, H3K27me3 can be recognized by the Polycomb Repressive Complex 1 (PRC1). The catalytic component of this repressive PRC1 complex is Ring1b, which monoubiquitinates H2A on lysine 119 (uH2A), leading to further repression. However, H2AK119 can be ubiquitinylated by other complexes also. Furthermore, unlike Drosophila PRC1, the basic 4 components in mammalian PRC1 have many alternative paralogs, resulting in a variety of different PRC1 complexes with different affinities for H3K27me3. Very little is known about the biological consequences of PRC1 complexes having different compositions, although it is known that the 4 mammalian paralogs of the histone binding subunit have varying affinities for H3K27me3. We hypothesize that a direct downstream consequence of more H3K27me3 in a subset of GCB-DLBCL may be that there will be more PCR1 recruitment and/or recruitment of different PRC1 complexes. This could result in more uH2A and/or more DNA methylation on some genes. Consequently, these genes are likely to display the most dysregulation. This project will characterize the Polycomb-mediated epigenetic changes that take place in normal human B cells as they differentiate into GC B cells, then into post-GC memory B cells. We will perform ChIP-seq to identify PRC1 components binding to H3K27me3, and compare this to the expression profile and DNA methylation profile to determine which genes are normally repressed in a Polycomb-mediated manner. We will analyze a large set of GC-DLBCL, will determine the epigenetic profile of lymphomas that bear or do not bear the Ezh2 mutation, and will relate this to their gene expression profile. These studies will provide insight into the dysregulation of genes in GCB- DLBCL, and will also provide novel information on the normal epigenetic mechanisms by which genes are repressed in a Polycomb-dependent manner during the late steps of B lymphocyte differentiation.

描述（由申请人提供）：越来越清楚的是，许多形式的癌症的发病机制具有重要的表观遗传成分。许多癌症类型的特征在于基因失活，并且基因可以通过表观遗传机制（例如DNA甲基化和/或获得抑制性组蛋白3修饰（例如赖氨酸27或9的甲基化））沉默。H3K27的甲基化由Polycomb蛋白Ezh2催化，Polycomb蛋白Ezh2是Polycomb抑制复合物2（PRC2）的催化组分。最近，在一种特定癌症亚型中高频率地检测到Ezh2催化位点的特定突变，该突变过度激活其H3 K27 me 3甲基转移酶活性，同时消除其单甲基化H3 K27的能力：弥漫性大B细胞淋巴瘤（GCB-DLBCL）的生发中心（GC）B细胞亚型。这种过度活跃的Ezh2突变不存在于所检查的任何其他类型的淋巴瘤中，这表明它可能与GCB-DLBCL淋巴瘤发生独特相关。Ezh2转录在naove B细胞中被抑制，但在GC B细胞中被上调。我们假设Ezh2表达在此阶段正常增加以抑制必须下调的特定基因亚组，以允许幼稚B细胞分化为GC B细胞，以及GC B细胞分化为GC后B细胞。一旦Ezh2甲基化H3K27，H3K27me3可以被Polycomb抑制复合物1（PRC 1）识别。这种抑制性PRC1复合物的催化组分是Ring1b，其使赖氨酸119（uH2A）上的H2A单倍化，导致进一步的抑制。然而，H2AK119也可以被其他复合物泛素化。此外，与果蝇PRC1不同，哺乳动物PRC1中的基本4个组分具有许多替代的旁系同源物，从而产生对H3K27me3具有不同亲和力的各种不同PRC1复合物。尽管已知组蛋白结合亚基的4种哺乳动物旁系同源物对H3K27me3具有不同的亲和力，但对具有不同组成的PRC1复合物的生物学后果知之甚少。我们假设GCB-DLBCL子集中更多H3 K27 me3的直接下游后果可能是将有更多的PCR 1募集和/或不同PRC 1复合体的募集。这可能会导致更多的uH2A和/或更多的DNA甲基化的一些基因。因此，这些基因可能表现出最多的失调。该项目将描述正常人类B细胞分化为GC B细胞，然后分化为GC后记忆B细胞时发生的Polycomb介导的表观遗传变化。我们将进行ChIP-seq以鉴定与H3K27me3结合的PRC1组分，并将其与表达谱和DNA甲基化谱进行比较，以确定哪些基因通常以Polycomb介导的方式被抑制。我们将分析大量GC-DLBCL，确定携带或不携带Ezh2突变的淋巴瘤的表观遗传特征，并将其与基因表达谱相关联。这些研究将提供对GCB-DLBCL中基因失调的了解，并且还将提供关于正常表观遗传机制的新信息，通过该机制，基因在B淋巴细胞分化的后期步骤期间以Polycomb依赖性方式被抑制。