The role of PRDM1 in epigenetic regulation and tumor suppression

PRDM1在表观遗传调控和肿瘤抑制中的作用

• 批准号: 8804577
• 负责人: Scott Moore Carlson
• 金额: $ 11.26万
• 依托单位: STANFORD UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-09-01 至 2017-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8804577
• 关键词: Active Sites; Antibodies; Arginine; Award; B-Lymphocytes; Binding Proteins; Biological; Biological Process; Biology; C-terminal; Cancer Biology; Cancer Cell Growth; Cell Differentiation process; Cell model; Cells; Cellular biology; Chemistry; Chromatin; Complement; Data; Development; Disease; EVI1 gene; Enzymes; Epigenetic Process; Family; Future; Gene Targeting; Genetic Transcription; Genetic study; Goals; Health; Histone H3; Histones; Human; In Vitro; Link; Lymphoma; Lysine; Malignant Neoplasms; Mass Spectrum Analysis; Mature B-Lymphocyte; Mediating; Medical Genetics; Mentors; Methylation; Methyltransferase; Modeling; Molecular; Molecular Biology; Mutate; N-terminal; Natural Killer Cells; Neoplasms; Non-Histone Chromosomal Proteins; Oncogenes; PRDM1 gene; Pathway interactions; Phenotype; Plasma Cells; Process; Protein Family; Protein Methylation; Protein Microchips; Proteins; Proteome; Proteomics; Reader; Recruitment Activity; Regulation; Research; Rest; Role; SET Domain; Signal Transduction; T-Cell Lymphoma; T-Lymphocyte; Techniques; Testing; Training; Transcriptional Regulation; Tumor Suppression; Tumor Suppressor Proteins; Work; Zinc Fingers; arginine methyltransferase; base; cancer type; chromatin immunoprecipitation; chromatin modification; enzyme activity; epigenetic regulation; high throughput screening; histone modification; in vitro Assay; in vivo; knock-down; leukemia; leukemia/lymphoma; member; novel; post-doctoral training; prevent; programs; reconstitution; research study; signal processing; skills; targeted treatment; tumorigenesis

DESCRIPTION (provided by applicant): The PRDM protein family has been an enigma since its discovery almost twenty years ago. The seventeen human PRDM proteins contain a PR domain with close homology to the SET domain family of lysine methyltransferase enzymes. Despite this similarity, with the exception of PRDM9, no PRDM proteins have well-characterized enzymatic activity. Members of the PRDM family have critical roles during development and many are important tumor suppressors or oncogenes, notably PRDM1 as a suppressor of leukemia and lymphoma, and PRDM16 as an oncogene in leukemia. The PR domain is often critical for tumor suppression or oncogenesis but its mechanism of action is unknown. I have identified PRDM1 as an arginine methyltransferase targeting histone H3 at arginine 17. Mutating a key active site residue reduces the ability of PRDM1 to suppress cancer cell growth in culture. This is a completely unexpected activity because all known arginine methyltransferases belong to a single protein family with little similarity to the PR or SET domains. It raises the possibiliy that arginine methylation is a broader function of the PRDM proteins and that this activity may be critical for their roles in development and disease. This proposal aims to uncover the molecular mechanisms of tumor suppression by PRDM1 methyltransferase activity. In the mentored portion I will investigate the biological effects of PRDM1 activity in cellular models of lymphoma, and test the hypothesis that chromatin modification is the primary biological function of PRDM1. In the independent portion of the award I will test the hypothesis that histone modification by PRDM1 mediates biological effects by recruiting or repelling specific chromatin-binding proteins, and determine whether PRDM1 methylates additional non-histone proteins. The final aim of this work is to determine whether other PRDM proteins also methylate arginine and whether this activity participates in regulating cancer pathways. Training during the mentored portion will focus on techniques in molecular and cell biology. These skills will complement my undergraduate and graduate training in chemistry, mass spectrometry and cellular signaling. Discovering PRDM1 as the first non-canonical arginine methyltransferase opens countless avenues for future work and equips me with a unique direction for my independent research. The training provided by this award will be instrumental in achieving my long-term goal of establishing a research program that investigates how signaling processes and epigenetics establish cellular identify, and how their dysregulation leads to disease.

描述（由申请人提供）：PRDM蛋白家族自近20年前发现以来一直是一个谜。17种人PRDM蛋白含有与赖氨酸甲基转移酶的SET结构域家族具有密切同源性的PR结构域。尽管有这种相似性，但除了PRDM9之外，没有PRDM蛋白具有良好表征的酶活性。PRDM家族的成员在发育过程中具有关键作用，并且许多是重要的肿瘤抑制因子或癌基因，特别是PRDM 1作为白血病和淋巴瘤的抑制因子，以及PRDM 16作为白血病中的癌基因。PR结构域通常对肿瘤抑制或肿瘤发生至关重要，但其作用机制尚不清楚。 我已经确定PRDM1是一个精氨酸甲基转移酶，靶向组蛋白H3的精氨酸17。突变关键活性位点残基降低PRDM1抑制培养物中癌细胞生长的能力。这是完全出乎意料的活性，因为所有已知的精氨酸甲基转移酶都属于与PR或SET结构域几乎没有相似性的单一蛋白质家族。它提出了精氨酸甲基化是PRDM蛋白的更广泛功能的可能性，并且这种活性可能对它们在发育和疾病中的作用至关重要。该提案旨在揭示PRDM1甲基转移酶活性抑制肿瘤的分子机制。在指导部分中，我将研究PRDM1活性在淋巴瘤细胞模型中的生物学效应，并测试染色质修饰是PRDM1的主要生物学功能的假设。在该奖项的独立部分，我将测试PRDM1通过招募或排斥特定的染色质结合蛋白介导组蛋白修饰的生物学效应的假设，并确定PRDM1是否甲基化其他非组蛋白蛋白。这项工作的最终目的是确定其他PRDM蛋白是否也甲基化精氨酸，以及这种活性是否参与调节癌症途径。 在指导部分的培训将集中在分子和细胞生物学技术。这些技能将补充我在化学，质谱和细胞信号方面的本科和研究生培训。发现PRDM 1是第一个非经典的精氨酸甲基转移酶，为未来的工作开辟了无数的途径，并为我的独立研究提供了独特的方向。该奖项提供的培训将有助于实现我的长期目标，即建立一个研究项目，研究信号传导过程和表观遗传学如何建立细胞识别，以及它们的失调如何导致疾病。