A Road Map to the Neocortex

新皮质路线图

• 批准号: 8896866
• 负责人: Sharad Ramanathan
• 金额: $ 84.5万
• 依托单位: HARVARD UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-09-30 至 2017-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8896866
• 关键词: Adult; Bayesian Analysis; Brain; Brain Part; Calcium; Cells; Complex; Computer Analysis; Congenital Abnormality; Conscious; Coupled; Data; Data Analyses; Development; Disease; Epilepsy; Event; Gene Expression; Genes; Genetic; Imaging technology; In Vitro; Language; Maps; Measures; Midbrain structure; Mitotic; Mus; Neocortex; Organ; Pattern; Pregnancy; Reporter; Research; Series; Space Perception; Stem cells; System; Testing; Time; abstracting; cell type; hippocampal pyramidal neuron; human disease; mouse development; new technology; novel; research study; tool

DESCRIPTION Abstract: An enormously complex part of the brain, the neocortex, is thought to give us the ability to generate conscious thought, develop language and perform complicated perception and spatial reasoning tasks. Understanding how the neocortex is built is key to understanding how our brain functions. Here, we propose to develop novel computational and experimental tools to help us understand how electrical activity and genetic circuits are coupled to generate the different cell types in this complex organ. While one might imagine an exceptionally elaborate network of genes giving rise to the brain, several reprogramming experiments suggest that just a handful developmentally important key factors control specific fate choices. We aim to discover these sets of factors to build a coarse road map of the key gene expression events leading to the neocortex, and over lay on this map the expression patterns of all the other genes. We will do so using the data that has the spatial and temporal expression pattern of every mouse gene during the course of the development of the mouse brain from mid gestation to adult. We will develop a novel computational paradigm to analyze this data and extract the rules governing the construction of the neocortex. We will test these rules directly in an in vitro directed differentiation system, focusing on the pyramidal neurons. To enable such tests, we are developing ground-breaking imaging technologies to both measure and perturb gene expression and electrical activity in thousands of single cells as they differentiate in vitro from stem cells to post-mitotic pyramidal neurons. We will measure dynamics of candidate factors predicted by our computational analysis as well as calcium and electrical activity in single cells by using multiple fluorescent reporters. By analyzing these single cell time-series expression and activity data using a Bayesian statistical analysis and directly perturbing the dynamics of expression of specific genes and e

描述 摘要： 大脑的一个极其复杂的部分，新大脑皮层，被认为给了我们产生有意识的思维，发展语言和执行复杂的感知和空间推理任务的能力。了解新大脑皮层是如何构建的，是了解我们大脑如何运作的关键。在这里，我们建议开发新的计算和实验工具，以帮助我们了解电活动和遗传电路是如何耦合在这个复杂器官中产生不同类型的细胞的。虽然人们可能会想象一个异常复杂的基因网络孕育了大脑，但几个重新编程的实验表明，只有少数几个对发育具有重要意义的关键因素控制着特定的命运选择。我们的目标是发现这些因素，以构建导致新皮质的关键基因表达事件的粗略路线图，并在该路线图上覆盖所有其他基因的表达模式。我们将使用从怀孕中期到成年小鼠大脑发育过程中每个小鼠基因的空间和时间表达模式的数据来做到这一点。我们将开发一种新的计算范式来分析这些数据，并提取管理新大脑皮层构建的规则。我们将在体外定向分化系统中直接测试这些规则，重点是锥体神经元。为了能够进行这样的测试，我们正在开发突破性的成像技术，以测量和干扰数千个单细胞在体外从干细胞分化为有丝分裂后锥体神经元时的基因表达和电活动。我们将测量通过计算分析预测的候选因素的动力学，以及使用多个荧光报告程序测量单细胞中的钙和电活动。通过使用贝叶斯统计分析来分析这些单细胞时间序列的表达和活性数据，并直接扰动特定基因和e的表达的动态

项目成果

Controlling interneuron activity in Caenorhabditis elegans to evoke chemotactic behaviour.

• DOI: 10.1038/nature11431
• 发表时间: 2012-10-11
• 期刊: NATURE
• 影响因子: 64.8
• 作者: Kocabas, Askin;Shen, Ching-Han;Guo, Zengcai V.;Ramanathan, Sharad
• 通讯作者: Ramanathan, Sharad

Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states.

• DOI: 10.7554/elife.20487
• 发表时间: 2017-03-15
• 期刊: eLife
• 影响因子: 7.7
• 作者: Jang S;Choubey S;Furchtgott L;Zou LN;Doyle A;Menon V;Loew EB;Krostag AR;Martinez RA;Madisen L;Levi BP;Ramanathan S
• 通讯作者: Ramanathan S