Dual High-Throughput Imaging Screen for Nucleolar Integrity and RNA Transcription

用于核仁完整性和 RNA 转录的双重高通量成像筛选

• 批准号: 8786874
• 负责人: Marikki Laiho
• 金额: $ 33.62万
• 依托单位: JOHNS HOPKINS UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-01-01 至 2016-12-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8786874
• 关键词: Affect; Algorithms; Anabolism; Area; Base Ratios; Biochemical; Biological Assay; Cancer Cell Growth; Cancer cell line; Catalytic Domain; Cell Nucleolus; Cell Nucleus; Cell Survival; Cell physiology; Cells; Cellular Metabolic Process; Characteristics; Chemicals; Chimeric Proteins; Collection; Complex; DNA; DNA Damage; DNA Polymerase I; Dactinomycin; Data; Dependency; Development; Dose; Drug Compounding; Drug usage; Genetic Transcription; Goals; Green Fluorescent Proteins; Growth; Image; Image Analysis; In Vitro; Lead; Libraries; Malignant Neoplasms; Masks; Measures; Mediating; Normal Cell; Nucleolar Proteins; Oncogenes; Outcome; PTEN gene; Pharmaceutical Preparations; Pharmacologic Substance; Phenotype; Polymerase; Process; Proteins; RNA; RNA Polymerase I; Regulation; Reproducibility; Retinoblastoma Protein; Ribosomal RNA; Ribosomes; Signal Pathway; Signal Transduction; Staining method; Stains; Stimulus; Stress; System; Testing; Therapeutic; Therapeutic Effect; Toxic effect; Transcription Process; Tumor Suppressor Proteins; Ubiquitin; Work; base; cancer cell; cancer therapy; chemotherapeutic agent; clinically relevant; cytotoxicity; design; extracellular; high throughput screening; inhibitor/antagonist; multicatalytic endopeptidase complex; novel; novel therapeutics; nucleophosmin; programs; public health relevance; response; screening; small molecule; small molecule libraries; synthetic protein; therapeutic target; tool

DESCRIPTION (provided by applicant): Cancers have altered transcriptional programs that lead to deregulation of normal cellular functions and support the cancer cell characteristics. A prerequisite for the cancer cell is an increase in its ribosynthetic activity to support the increaed protein synthetic needs. These processes are governed by RNA polymerase I (Pol I), which is highly responsive to external stimuli and commonly hyperactivated in cancer. Yet, it has not been exploited as a clinically relevant target. Pol I transcription and ribosome biosynthesis are exquisite processes of the nucleolus. Aberration of Pol I transcription leads to nucleolar stress and disintegration of the nucleolus leading to a distinctive, identifiable cellular phenotype. This project sets forth a dual cell-based high-content imaging screen, adaptable to high-throughput screening (HTS) platforms, for regulators of nucleolar stress and of Pol I. The screen will utilize as identifiable marks, the translocation of a nucleolar fluorescent fusion protein stably integrate in cancer cells and the expression of the catalytic subunit of Pol I. Data presented here show that the Pol I catalytic subunit can be selectively targeted for degradation and that its targetingis associated with decreased cancer cell viability. This project aims to define the feasibility of thee readouts for HTS platforms, and to demonstrate the suitability and reproducibility of the assay to identify novel regulators. The rationale for the proposed work is that it will provide fundamentall novel screening tools for regulation of Pol I activity. The goal is to employ the screen to identif, firstly, inhibitors of nucleolar activities and secondly, specific regulators of the Pol I catalyti subunit. Towards these goals, in Aim 1, the dual-screening assay will be established, tested and parameters will be set for hit thresholds. Using a defined chemical library of pharmaceuticals in current therapy use, Aim 2 has been devised to systematically screen for drugs and compounds that affect the nucleolar integrity and Pol I transcription, and to provide verification of the assy set-up and reproducibility for high-throughput platforms. Aim 3 has been designed to validate the screen hits through secondary screens and assays that determine which Pol I complex factors and nucleolar processes are affected. These approaches will define the current drug space affecting Pol I, identify potential new effects beneficial for therapeutic outcome, and support application of the screen to diverse large-scale chemical library collections. The study will significantly increase the understanding how inhibition of rRNA transcription contributes to curb growth of cancer cells, and identify new drugs and small-molecule lead molecules in this process.

描述（由申请人提供）：癌症改变了转录程序，导致正常细胞功能失调并支持癌细胞特征。癌细胞的先决条件是其核糖合成活性的增加，以支持增加的蛋白质合成需求。这些过程由RNA聚合酶I（Pol I）控制，RNA聚合酶I对外部刺激高度敏感，通常在癌症中过度活化。然而，它还没有被开发为临床相关的目标。Pol I的转录和核糖体的生物合成是核仁的精细过程。Pol I转录的畸变导致核仁应激和核仁解体，从而导致独特的、可识别的细胞表型。这 项目提出了一种基于双细胞的高内涵成像屏幕，适用于高通量筛选（HTS）平台，用于核仁应激和Pol I的调节剂。该筛选将利用稳定整合在癌细胞中的核仁荧光融合蛋白的易位和Pol I的催化亚基的表达作为可识别的标记。这里提供的数据表明，Pol I催化亚基可以被选择性地靶向降解，并且其靶向与癌细胞活力降低相关。该项目旨在确定HTS平台的三个读数的可行性，并证明该测定法用于鉴定新型调节剂的适用性和重现性。所提出的工作的基本原理是，它将提供fundamentall新的筛选工具，调节Pol I活性。我们的目标是采用屏幕识别，首先，抑制剂的核仁活动，其次，具体的调节剂的Pol I catalyti亚基。为了实现这些目标，在目标1中，将建立、测试双重筛选测定法，并设定命中阈值的参数。使用目前治疗使用的药物的定义的化学库，目的2已被设计为系统地筛选影响核仁完整性和Pol I转录的药物和化合物，并提供高通量平台的assy设置和再现性的验证。目的3旨在通过二级筛选和测定来验证筛选命中，以确定哪些Pol I复合物因子和核仁过程受到影响。这些方法将定义当前影响Pol I的药物空间，确定有益于治疗结果的潜在新效应，并支持将筛选应用于各种大规模化学文库。该研究将显着增加对rRNA转录抑制如何有助于抑制癌细胞生长的了解，并在这一过程中识别新药和小分子先导分子。