Global identification of endogenous ERAD substrates

内源性 ERAD 底物的整体鉴定

• 批准号: 9365628
• 负责人: JAMES A OLZMANN
• 金额: $ 22.53万
• 依托单位: UNIVERSITY OF CALIFORNIA BERKELEY
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-07-01 至 2019-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9365628
• 关键词: ATP phosphohydrolase; Amyloidosis; Biomedical Research; CRISPR/Cas technology; Cell Line; Cell physiology; Cell surface; Cells; Cellular biology; Cholesterol; Communities; Complex; Cytoplasm; Detection; Disease; Dislocations; Endoplasmic Reticulum; Endoplasmic Reticulum Degradation Pathway; Ensure; Enzymes; Fatty Acids; Genes; Goals; Growth Factor; Health; Human; Hydroxymethylglutaryl-CoA reductase; Integral Membrane Protein; Knowledge; Laboratories; Link; Lipids; Liver diseases; Mediating; Membrane; Metabolic; Metabolic Diseases; Methods; Mixed Function Oxygenases; Modeling; Modification; Molecular; Molecular Conformation; Monitor; Mutation; Neurodegenerative Disorders; Pathway interactions; Peptide Hydrolases; Polyubiquitin; Process; Proteins; Proteolysis; Proteome; Proteomics; Quality Control; Reporting; Research; Role; Squalene; Sterols; System; Testing; Ubiquitination; age related; extracellular; fatty acid supplementation; genome editing; improved; inhibitor/antagonist; misfolded protein; overexpression; prevent; protein aggregation; protein degradation; protein folding; proteostasis; receptor; trafficking; ubiquitin-protein ligase

PROJECT SUMMARY / ABSTRACT The long-term goal of our research is to achieve a global and mechanistic understanding of the process by which proteins transiting the endoplasmic reticulum (ER) are recognized and targeted for degradation. The ER is responsible for the folding, modification, and trafficking of approximately one-third of the cellular proteome, including integral membrane proteins that are presented on the cell surface (e.g. channels and receptors) and soluble proteins that are secreted (e.g. growth factors and extracellular proteases). The quality of the proteins that are deployed from the ER is tightly monitored and controlled by a system now known as ER-associated degradation (ERAD). ERAD employs an extensive network of components that mediate misfolded protein detection, dislocation into the cytoplasm, ubiquitination, and proteasomal degradation. In addition to its role in the clearance of misfolded proteins (i.e. quality control), ERAD also regulates the abundance of proteins (i.e. quantity control) to modulate important cell biology processes. For example, ERAD mediates the sterol- dependent degradation of enzymes necessary for cholesterol synthesis, HMG CoA reductase and squalene monooxygenase. Due to the lack of global methods to study ERAD, our understanding of the pools of endogenous substrates that are degraded by different ERAD pathways remains limited. To overcome this obstacle, we developed a VCP-inhibitor substrate trapping approach (VISTA) to identify endogenous ERAD substrates. In our proposed research we will apply this unique strategy to: 1) define pathway-specific ERAD substrates and 2) identify metabolically regulated ERAD substrates. Our studies will characterize a new method of broad utility to the biomedical research community and will advance our understanding of the role of ERAD in cellular protein homeostasis.

项目总结/摘要 我们研究的长期目标是通过以下方式实现对该过程的全面和机械理解： 其中通过内质网（ER）的蛋白质被识别并靶向降解。急诊室 负责大约三分之一的细胞蛋白质组的折叠、修饰和运输， 包括存在于细胞表面上的整合膜蛋白（例如通道和受体）， 分泌的可溶性蛋白质（例如生长因子和细胞外蛋白酶）。蛋白质的质量 从应急反应室部署的武器由一个现在被称为应急反应室相关的系统严密监测和控制， 降解（ERAD）。ERAD采用广泛的组件网络，介导错误折叠的蛋白质 检测、移位到细胞质中、泛素化和蛋白酶体降解。除了在以下方面的作用外， 除了错误折叠蛋白质的清除（即质量控制），ERAD还调节蛋白质的丰度（即， 数量控制）以调节重要的细胞生物学过程。例如，ERAD介导固醇- 胆固醇合成所必需的酶、HMG CoA还原酶和角鲨烯的依赖性降解 单加氧酶由于缺乏研究ERAD的全球方法，我们对ERAD池的理解 通过不同ERAD途径降解的内源性底物仍然有限。为了克服这个 障碍，我们开发了一种VCP抑制剂底物捕获方法（VISTA），以确定内源性ERAD 印刷受体.在我们提出的研究中，我们将应用这种独特的策略：1）定义特定于路径的ERAD 底物和2）鉴定代谢调节的ERAD底物。我们的研究将描述一种新的 广泛实用的方法，以生物医学研究界，并将促进我们的作用的理解， ERAD在细胞蛋白质稳态中的作用。