MADS-box transcriptional regulation of dimorphic transition in Penicillium marneffei

马尔尼菲青霉二态性转变的 MADS-box 转录调控

• 批准号: 9303893
• 负责人: James Jing Cai
• 金额: $ 16.71万
• 依托单位: TEXAS A&M AGRILIFE RESEARCH
• 依托单位国家: 美国
• 财政年份: 2016
• 资助国家: 美国
• 起止时间: 2016-06-27 至 2019-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9303893
• 关键词: Acquired Immunodeficiency Syndrome; Acute; Anemia; Area; Body Temperature; Cellular Morphology; ChIP-seq; Clinical; DNA; Data; Development; Diagnostic; Evolution; Family; Fever; Foundations; Future; Gene Deletion; General Population; Genes; Genetic; Genomic Segment; Genomics; Goals; Growth; HIV Infections; Hospital Mortality; Immune; Immunocompromised Host; Immunosuppression; Individual; Infection; Investigation; Knowledge; Link; Liver; Maps; Methods; Molecular; Morphogenesis; Morphology; Mutation; Mycoses; Pathogenicity; Patients; Penicillium; Phase; Phase Transition; Phylogenetic Analysis; Play; Process; Public Health; Reporting; Research; Role; Southeastern Asia; Swelling; System; Techniques; Temperature; Testing; Therapeutic; Transcriptional Regulation; Virulence; Yeasts; base; dimorphism; effective intervention; expectation; fungus; gain of function; genome sequencing; innovation; latent infection; loss of function; loss of function mutation; lymph nodes; mortality; mouse model; mutant; novel; overexpression; pathogen; prevent; skin lesion; transcription factor; transcriptome sequencing; transmission process; whole genome

Systemic dimorphic fungi collectively cause over one million new infections every year. Latent infections worldwide grow to the tens of millions, making them a priority for today's research. Penicillium marneffei (Pm) is of particular concern due to a marked increase in the number of cases of penicilliosis in the last 20 years, which has been concurrent with the rise in immunosuppression due to the global spread of HIV infections. Pm grows as hypha in its environmental reservoir and as yeast in mammalian hosts. The phase transition between the two growth forms is considered to be essential for its pathogenicity and the transmission of penicilliosis. The transition between hypha and yeast is reversible and can be triggered at a sharp threshold temperature of 37°C. The precise mechanisms underlying the thermosensing and the phase transition in Pm remain unknown. Therefore, there is a critical need to identify key genes and regulatory processes involved in the morphogenetic control in Pm. The applicants' recent findings provide a promising, new opportunity for target identification. Using an innovative, serial culture-based experimental evolution (EE) technique, the applicants derived mutant Pm strains that undergo the hypha-to-yeast phase transition at 30°C rather than 37°C. DNA- and RNA- sequencing of the mutant and wild-type strains revealed important roles of a family of MADS-box transcription factor (TF) genes, especially madsB and madsA, in regulating thermal dimorphism in Pm. The expression of madsB in wild type is up-regulated 1,500-fold during the hypha-to-yeast transition. The madsB loss-of-function mutation caused by genomic deletion in mutant strains seems to be responsible for the lower threshold temperature of phase transition. Significantly, EE-derived mutants are found to be completely avirulent in the mouse model, suggesting that the precise threshold temperature at 37°C for the phase transition is essential for Pm to infect and/or adapt to the host condition. Furthermore, the overexpression of madsA causes Pm to grow as hypha instead of yeast at 37°C. These preliminary data led to the central hypothesis that the Pm thermosensing systems act through temperature-responsive activities of the MADS-box TFs. Based on these preliminary results, the applicants propose the following two Specific Aims: (1) determine the roles of madsB and madsA in regulating thermal dimorphism in Pm, and (2) identify the downstream targets of MadsB and MadsA. Upon completion of the proposed research, the applicants expect to critically test the functions of the two MADS-box TFs in regulating dimorphic development in Pm (Aim 1). The applicants will identify the downstream targets of MadsB and/or MadsA, and examine the functions of selected targets in Pm (Aim 2). Together, these results will provide much-needed entry points to further investigate the otherwise mysterious mechanisms underlying thermal dimorphism in this important but understudied fungal pathogen.

系统性二形真菌每年总共造成超过100万例新感染。潜伏感染

项目成果

Novel Partitivirus Enhances Virulence of and Causes Aberrant Gene Expression in Talaromyces marneffei.

• DOI: 10.1128/mbio.00947-18
• 发表时间: 2018-06-12
• 期刊: mBio
• 影响因子: 6.4
• 作者: Lau SKP;Lo GCS;Chow FWN;Fan RYY;Cai JJ;Yuen KY;Woo PCY
• 通讯作者: Woo PCY

Simulating variance heterogeneity in quantitative genome wide association studies.

• DOI: 10.1186/s12859-018-2061-1
• 发表时间: 2018-03-21
• 期刊: BMC bioinformatics
• 影响因子: 3
• 作者: Al Kawam A;Alshawaqfeh M;Cai JJ;Serpedin E;Datta A
• 通讯作者: Datta A

Expression profiling of disease progression in canine model of Duchenne muscular dystrophy.

• DOI: 10.1371/journal.pone.0194485
• 发表时间: 2018
• 期刊: PloS one
• 影响因子: 3.7
• 作者: Brinkmeyer-Langford C;Chu C;Balog-Alvarez C;Yu X;Cai JJ;Nabity M;Kornegay JN
• 通讯作者: Kornegay JN

AEGS: identifying aberrantly expressed gene sets for differential variability analysis.

AEGS：识别异常表达的基因集以进行差异变异性分析

• DOI: 10.1093/bioinformatics/btx646
• 发表时间: 2018-03-01
• 期刊: Bioinformatics (Oxford, England)
• 作者: Guan J;Chen M;Ye C;Cai JJ;Ji G
• 通讯作者: Ji G