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Genetic Epidemiology of Early-Onset Alzheimers disease in Caribbean Hispanics and non-Hispanic Whites

加勒比西班牙裔和非西班牙裔白人早发性阿尔茨海默病的遗传流行病学

基本信息

批准号：
9194817
负责人：
Gary Wayne Beecham
金额：
$ 357.86万
依托单位：
UNIVERSITY OF MIAMI SCHOOL OF MEDICINE
依托单位国家：
美国
项目类别：
财政年份：
2016
资助国家：
美国
起止时间：
2016-09-15 至 2022-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/9194817
关键词：
Accounting Affect Age Aged, 80 and over Alzheimer&apos s Disease Alzheimer&apos s disease risk Amyloid Amyloid beta-Protein Bioinformatics Biological Biological Markers Caribbean Hispanic Custom Data Data Set Disease Elderly Elements Ensure Ethnic group Etiology Family Fostering Frequencies Generations Genes Genetic Genomics Genotype Goals Hispanics Individual Late Onset Alzheimer Disease Maps Minority Molecular Mutation Not Hispanic or Latino Peptides Phenotype Pilot Projects Population Presenile Alzheimer Dementia Proteins Protocols documentation RNA Race Resources Risk Sampling Screening procedure Series Technology Testing Therapeutic Validation Variant base case control cohort design early onset genetic epidemiology genetic risk factor genetic variant genome sequencing genome wide association study genome-wide insight interest member mutation carrier novel presenilin-1 presenilin-2 risk variant screening segregation sex targeted sequencing tau Proteins therapeutic target tool whole genome

项目摘要

Project Summary To further disentangle the molecular mechanisms underlying Alzheimer's disease (AD) and to foster the mapping of therapeutic targets, we propose an extreme phenotype design: a whole-genome sequencing (WGS) study of early-onset AD (EOAD) in a large set of multiply affected, well-phenotyped Caribbean Hispanic (CH) and non-Hispanic White (NHW) families. Extreme phenotype designs (e.g., early age-at-onset--AAO, fast vs. slow progressors, very high vs. very low biomarker levels, etc) increase statistical power by creating more homogeneous and genetically loaded populations, and have the potential to reveal genetic risk factors and mechanisms that are difficult to identify in more heterogeneous datasets. This is critical for clarifying AD etiology and developing more effective therapeutic targets. Early studies in AD focused on EOAD and identified a limited number of highly penetrant risk variants: APP, PSEN1, and PSEN2. These genes increase the generation and/or aggregation of the amyloid ß peptide, an observation that underlies current therapeutic strategies. However, these known mutations account for less than half of the genetic basis of EOAD. Many of the EOAD families do not carry known mutations, and among known mutation carriers AAO is often highly variable. This unexplained genetic component to EOAD represents a critical gap in our understanding of AD etiology—a gap not filled by the ongoing AD sequencing studies, which largely focus on the more heterogeneous late-onset form of AD (LOAD). Additionally, this proposal includes both Hispanic and non-Hispanic white samples. The inclusion of minority populations allows us to examine EOAD risk in an understudied but fast-growing population and to map AD risk loci that are unique to this ethnic group, giving further insight into the etiologic mechanisms underlying the disease. To accomplish these goals, we propose the following Aims: (SA1) Identification of novel genetic risk factors for EOAD by whole genome and targeted sequencing. We will perform WGS in 87 multiplex EOAD families, followed by bioinformatics annotation and prioritization based on segregation and function. Highest priority genes/regions will be validated in the family and then will become targets for custom sequencing in a set of EOAD singletons to maximize variant identification. (SA2) Putative functional loci resulting from SA1 will be validated in independent EOAD samples using custom genotyping arrays and (SA3) evaluated for generalizability to late-onset AD using existing LOAD resources such as the ADSP, ADGC, and WHICAP datasets. Finally (4), the most interesting variants will be subject to rapid, biological screening procedures to determine their molecular effects.

项目总结