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Discovery and characterization of biocatalysts for ribosomally encoded alpha-N-methylated peptide natural products

核糖体编码的α-N-甲基化肽天然产物生物催化剂的发现和表征

基本信息

批准号：
10640089
负责人：
Michael F Freeman
金额：
$ 35.98万
依托单位：
UNIVERSITY OF MINNESOTA
依托单位国家：
美国
项目类别：
财政年份：
2019
资助国家：
美国
起止时间：
2019-08-01 至 2024-05-31
项目状态：
已结题

项目摘要

PROJECT SUMMARY / ABSTRACT Since the discovery of penicillin in the 1920s, bioactive peptide natural products have been used as antibiotic, antiviral, immunosuppressive, and anti-cancer agents. Many of these bioactive peptides harbor backbone α-N-methylations and/or macrocyclizations, since these tailorings significantly improve peptide pharmacokinetics. As seen in the blockbuster immunosuppressant cyclosporin A, α-N-methylated peptides have increased structural rigidity, proteolytic resistance, and membrane permeability. Additionally, cyclic α-N- methylated peptides are able to bind large, flat surfaces with high affinity, making them attractive targets for disrupting protein-protein interactions. Despite these advantages, inefficient synthetic and in vitro processes hinder the production, screening, and optimization of α-N-methylated peptides. In addition, natural sources of amide backbone-methylated peptides were thought to be completely limited to inflexible nonribosomal peptide biosynthetic pathways. The goal of this work is to tease out the mechanistic and structural constraints of α-N- methylating biocatalysts within our newly discovered ribosomally encoded peptide natural product family called the borosins. Our first objective identifies a potent bioactive model system encoded in a basidiomycete fungus to tease out the rules and limitations of borosin α-N-methylation, N-to-C macrocyclization, and bioactivity. Our second objective focuses on structurally distinct borosin family members, where we will perform detailed kinetic measurements to tease out the mechanism for chemically challenging α-N-methylation. We also outline our longer-term visions to develop methods for studying peptide natural products in basidiomycete fungi as well as our efforts to tease out the potential biological roles of borosin metabolites. This research will create a diverse toolbox of flexible and efficient catalysts for the biological production, screening, and optimization of genetically templated bioactive α-N-methylated peptides.

项目摘要/摘要

项目成果

期刊论文数量（5）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

TaxiBGC: a Taxonomy-Guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secondary Metabolite Production Potential in Metagenomes.

DOI：
10.1128/msystems.00925-22
发表时间：
2022-12-20
期刊：
mSystems
影响因子：
6.4
作者：
通讯作者：

RiPP enzyme heterocomplex structure-guided discovery of a bacterial borosin α-N-methylated peptide natural product.

DOI：
10.1039/d3cb00093a
发表时间：
2023-10-04
期刊：
RSC chemical biology
影响因子：
4.1
作者：
通讯作者：

Diverse Protein Architectures and α-N-Methylation Patterns Define Split Borosin RiPP Biosynthetic Gene Clusters.

DOI：
10.1021/acschembio.1c01002
发表时间：
2022-04-15
期刊：
ACS CHEMICAL BIOLOGY
影响因子：
4
作者：
Imani, Aman S.;Lee, Aileen R.;Vishwanathan, Nisha;de Waal, Floris;Freeman, Michael F.
通讯作者：
Freeman, Michael F.

Enzyme-mediated backbone N-methylation in ribosomally encoded peptides.

DOI：
10.1016/bs.mie.2021.04.014
发表时间：
2021
期刊：
Methods in enzymology
影响因子：
0
作者：
Emmanuel Matabaro;Haigang Song;Clara Chepkirui;Hannelore Kaspar;L. Witte;J. Naismith;M. Freeman;
通讯作者：
Emmanuel Matabaro;Haigang Song;Clara Chepkirui;Hannelore Kaspar;L. Witte;J. Naismith;M. Freeman;

Conformational rearrangements enable iterative backbone N-methylation in RiPP biosynthesis.