Novel Sensor Integrated Proteome on Chip (SPOC) platform for evaluating kinetic parameters of protein interactions in high throughput

新型传感器集成芯片上蛋白质组 (SPOC) 平台，用于评估高通量蛋白质相互作用的动力学参数

• 批准号: 10547479
• 负责人: Bharath Takulapalli
• 金额: $ 117.87万
• 依托单位: SPOC PROTEOMICS INC.
• 依托单位国家: 美国
• 财政年份: 2022
• 资助国家: 美国
• 起止时间: 2022-08-12 至 2024-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10547479
• 关键词: Address; Animal Model; Antibodies; Area; Back; Benchmarking; Binding; Binding Proteins; Biological Assay; Biological Process; Biosensor; Budgets; Capital; Catalogs; Cells; ChIP-on-chip; Collaborations; Custom; DNA; Data; Detection; Development; Diagnosis; Enzyme-Linked Immunosorbent Assay; Evaluation; Florida; Fluorescent Dyes; Funding; Genes; Goals; Gold; Human; Image; Imaging Device; In Situ; Institutes; Investments; Kinetics; Label; Length; Letters; Microarray Analysis; Molecular; Monitor; Monoclonal Antibodies; Mus; Natural regeneration; Nature; Output; Pattern; Phage Display; Phase; Privatization; Protein Array; Protein Microchips; Proteins; Proteome; Proteomics; Protocols documentation; RNA; Research; Running; Serum; Shapes; Small Business Innovation Research Grant; Spottings; Surface; Surface Plasmon Resonance; System; Technology; Testing; Time; Validation; Variant; base; biomarker discovery; clinically relevant; commercialization; cost; drug development; high throughput analysis; imaging detection; imaging system; instrument; monolayer; mouse model; novel; phenotypic biomarker; precision medicine; programs; protein expression; protein folding; protein function; protein protein interaction; screening; sensor; small molecule; testing services; tool; vaccine development; waiver

Abstract A critical bottleneck in the field of proteomics is the inability to simultaneously and cost-effectively evaluate thousands of functional protein interactions at once to obtain kinetic data. Although conventional in-situ protein microarray technology is well developed, it uses fluorescent dye based detection that provides only qualitative or semi-quantitative information. There is currently no technology that offers label-free real-time interaction assays of full-length folded proteins in high throughput format. To address this unmet need, INanoBio is developing novel sensor integrated proteome on chip (SPOC) platform that combines in situ expression and capture of functional proteins on biosensors, to allow instant high throughput analysis of thousands of proteins in real time. In this SBIR phase II project, we propose to develop SPOC platform by integrating in situ produced protein arrays with surface plasmon resonance imaging (SPRi), by building integrated ProSPR instrument that will enable SPRi determination of both qualitative and kinetic information of protein biomolecular interactions in high throughput. We will develop, validate and apply 1000 protein SPOC SPRi sensor chips to study clinically relevant protein- protein interactions and test off-target binding of new antibodies produced in animal models against human proteins.

摘要 蛋白质组学领域的一个关键瓶颈是无法同时和成本有效地 一次评估数千种功能蛋白质相互作用以获得动力学数据。虽然 传统的原位蛋白质微阵列技术已经发展成熟，它使用荧光染料 仅提供定性或半定量信息的检测。目前 没有技术提供全长折叠蛋白质的无标记实时相互作用测定， 高通量格式。为了满足这一未满足的需求，INanoBio正在开发新型传感器 整合蛋白质组芯片（SPOC）平台，结合原位表达和捕获 生物传感器上的功能蛋白质，以允许即时高通量分析成千上万的 蛋白质在真实的时间。在这项SBIR第II阶段计划中，我们建议透过以下方式发展SPOC平台： 将原位产生的蛋白质阵列与表面等离子体共振成像（SPRi）整合， 建立集成的ProSPR仪器，使SPRI的定性和 高通量蛋白质生物分子相互作用的动力学信息。我们会发展， 验证并应用1000蛋白SPOC SPRi传感器芯片研究临床相关蛋白- 蛋白质相互作用和测试在动物模型中产生的新抗体的脱靶结合 对抗人类蛋白质。