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Enzymatic Differences Among Hepatitis C Virus Genotypes

丙型肝炎病毒基因型之间的酶学差异

基本信息

批准号：
7174231
负责人：
David N Frick
金额：
$ 29.68万
依托单位：
NEW YORK MEDICAL COLLEGE
依托单位国家：
美国
项目类别：
财政年份：
2003
资助国家：
美国
起止时间：
2003-02-15 至 2009-01-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7174231
关键词：
Acute Adverse effects Affinity Alleles American Amino Acids Antiviral Agents Biochemical Biological Biological Assay Biological Testing Chronic Active Hepatitis Cirrhosis DNA Data Development Drug Combinations Drug Delivery Systems Drug Design Enzymes Evolution Future Genes Genetic Genetic Heterogeneity Genetic Variation Genotype Goals Green Fluorescent Proteins Hepatitis C Hepatitis C virus Hydrolysis Immune system In Vitro Infection Interferons Kinetics Lead Left Liver Failure Localized Malignant Neoplasms Measures Molecular Mutagenesis Mutagens Mutation North America Nucleic Acids Nucleotides Numbers Patients Pharmaceutical Preparations Phenotype Polymerase Population Property Proteins RNA RNA Sequences RNA chemical synthesis RNA-Directed RNA Polymerase Rate Relative (related person)Replicon Ribavirin Role Site-Directed Mutagenesis Structure Structure-Activity Relationship Symptoms System Testing Variant Viral Viral Proteins Virus base drug development helicase in vivo inhibitor/antagonist innovation mutant novel nucleoside analog protein expression protein structure research study response viral RNA virus genetics

项目摘要

Almost one in every fifty-five Americans have been exposed to the Hepatitis C Virus (HCV), but most are unaware of their infection because the virus causes few acute symptoms. If left untreated, the majority of HCV infections lead to chronic active hepatitis that eventually progresses to cirrhosis, cancer, or liver failure. Current therapies involving the drugs interferon and ribavirin are costly and produce debilitating side effects, frequently worse than the symptoms produced by HCV itself. Newer treatments are, however, quite effective against certain viral genotypes. This proposal will examine the HCV proteins most directly involved in viral replication, the NS3 Helicase and NS5B polymerase, as putative targets for the drug ribavirin and as targets for new antiviral agents. In addition to its established role as a modulator of the immune system, ribavirin has been proposed to eliminate viruses as a mutagen or through direct effects on viral replicative proteins. One popular hypothesis states that ribavirin's enhancement of the already high HCV mutation rate leads to a catastrophe of errors and subsequent virus elimination. Here, ribavirin effects will be examined in vitro, in enzyme assays, and in vivo, using a novel HCV replicon that should allow the assessment of replication fidelity. To attempt to relate ribavirin effects to genotype-specific drug response, all experiments will be repeated with the three most common American HCV genotypes, two that normally do not respond to therapy (la and lb) and one that frequently responds to therapy (2a). The polymerase and helicase proteins from each genotype will also be characterized to define conserved and divergent properties. A rigorous biochemical approach will be used to define enzyme differences because sequence data alone does not accurately predict protein structure or function. Preliminary data show that different genotypes encode enzymes with markedly different properties, hampering current rational drug design efforts. Structure-based site-directed mutagenesis will be used to determine the genetic basis for HCV enzyme variability. The biological consequences (i.e. replication rate, fidelity, protein expression) of HCV genetic variation will then be analyzed in a replicon system. The delineation of genetic variations responsible for certain phenotypes might allow the prediction of patient response to current or future HCV therapies, and the clear identification of conserved HCV enzyme properties will aid future HCV drug development.

几乎每55个美国人中就有一个接触过丙型肝炎病毒，但大多数人没有意识到他们的感染，因为病毒几乎不会引起急性症状。如果不治疗，大多数人丙型肝炎病毒感染会导致慢性活动性肝炎，最终发展为肝硬化、癌症或肝功能衰竭。目前涉及干扰素和利巴韦林的治疗方法成本高昂，而且会产生令人衰弱的副作用，通常比丙型肝炎病毒本身产生的症状更糟糕。然而，较新的治疗方法相当有效。对抗某些病毒基因型别。这项建议将检查与病毒最直接相关的丙型肝炎病毒蛋白。复制、NS3解旋酶和NS5B聚合酶作为药物利巴韦林的假定靶点和靶点寻找新的抗病毒药物。除了作为免疫系统调节器的既定角色外，利巴韦林已经提出通过直接作用于病毒复制蛋白来消除病毒作为诱变剂的作用。一种流行的假设是，利巴韦林提高了已经很高的丙型肝炎病毒变异率，导致错误的灾难和随后的病毒消除。在这里，利巴韦林的作用将在体外进行检测，酶分析，以及在体内，使用一种新的丙型肝炎病毒复制子，应该允许评估复制富达。为了尝试将利巴韦林效应与特定基因型的药物反应联系起来，所有实验都将与美国最常见的三种丙型肝炎病毒基因型重复，其中两种通常对治疗(1a和1b)和经常对治疗有反应的一种(2a)。聚合酶和解旋酶每种类型的蛋白质也将被表征，以定义保守和不同的性质。一个严格的生化方法将被用来定义酶的差异，因为仅仅序列数据不能准确预测蛋白质的结构或功能。初步数据显示，不同的基因类型编码具有明显不同性质的酶，阻碍了当前合理的药物设计努力。基于结构的定点突变将用于确定丙型肝炎病毒酶的遗传基础可变性。丙型肝炎病毒基因的生物学后果(即复制率、保真度、蛋白表达) 然后将在复制子系统中对变异进行分析。对遗传变异的描述某些表型可能允许预测患者对当前或未来的丙型肝炎治疗的反应，以及对保守的丙型肝炎病毒酶特性的明确鉴定将有助于未来丙型肝炎药物的开发。