Towards a biophysical model of human cortical neurophysiological signatures that incorporates cellular and cell type biophysics, transcriptomics, and morphology

建立人类皮质神经生理学特征的生物物理模型，该模型融合了细胞和细胞类型生物物理学、转录组学和形态学

• 批准号: 10736709
• 负责人: Constantinos Anastassiou
• 金额: $ 59.36万
• 依托单位: CEDARS-SINAI MEDICAL CENTER
• 依托单位国家: 美国
• 财政年份: 2023
• 资助国家: 美国
• 起止时间: 2023-06-15 至 2028-05-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10736709
• 关键词: Affect; Architecture; Biological; Biological Markers; Biophysical Process; Biophysics; Brain; Catalogs; Cations; Cell model; Cell physiology; Cells; Censuses; Characteristics; Collection; Communities; Computer Models; Data; Data Set; Detection; Electrophysiology (science); Exhibits; Frequencies; Gene Expression Profile; Generations; Genetic Transcription; Goals; Human; Individual; Ion Channel; Link; Measurable; Measurement; Measures; Modality; Modeling; Morphology; Neocortex; Neurons; Patch Tests; Pattern; Performance; Physiology; Procedures; Property; Resolution; Resources; Role; Signal Transduction; Source; Stress Tests; Synapses; Testing; Translating; Validation; biophysical model; cell cortex; cell type; computerized tools; density; experimental study; extracellular; feasibility testing; hippocampal pyramidal neuron; human model; in vivo; insight; large scale data; model building; models and simulation; multimodal data; multimodality; neocortical; neural; neural circuit; neurophysiology; novel; patch clamp; potential biomarker; predictive modeling; response; simulation; spatiotemporal; statistical learning; tool; transcriptomics; translational applications

Project Summary The past decade has seen an unprecedented accumulation of data at the single-cell level giving rise to unique, multimodal sets of gene expression patterns, morphologies, and electrophysiology characteristics. This high- resolution census of neuronal types in the brain constitutes an essential step towards a mechanistic understanding of circuits and brain computations. However, linking cellular identity and activity to circuits and neurophysiological signals remains daunting. The central goal of this proposal is to develop a set of publicly available computational models, tools and resources that allow testing mechanistic hypotheses about the role of different neuronal types in neural circuit function, that can be used to analyze neural data, and can serve to identify potential biomarkers of cortical function in the brain. The proposed approach starts with building rigorous computational models of individual human neocortical neurons linking transcription, morphology, and physiology. Next, we connect neurons into cortical circuits, emulate their activity and simulate the associated neurophysiological signals generated from those circuits. At all steps, the models are guided by, and compared to, existing state-of-the-art measurements. As a proof-of-principle, we use a human cortical circuit model to study the impact of the hyperpolarization-activated non-specific cation current, Ih, carried by h-channels. Specifically, we recently showed that Ih differences within human pyramidal FREM3 neurons alter their synaptic integration properties. The existence of an Ih depth gradient along human layer 2/3 in FREM3 neurons in fact is a fundamental organizing principle of the supragranular cortex. Even so, its role and how it affects circuit processing and associated neurophysiological signals remains unknown. The human cortical circuit model provides an ideal testbed where hypotheses about the role of the FREM3 Ih depth gradient can be tested. First, we hypothesize that while fundamental spike properties of FREM3 models remain broadly unaffected by deep vs. superficial FREM3 Ih-differences, the circuit activity will be substantially affected and a coincidence detection gradient will emerge along the cortical depth axis (facilitated by the Ih gradient in FREM3). Furthermore, we hypothesize that deep in the circuit where FREM3 has both increased Ih and coincidence detection, the local extracellular signals will exhibit lower power in the slower bands and increased power in faster ones. Accordingly, we expect decreased Ih (superficial neurons) to lead to a relative increase in power in theta-slow gamma and a decrease in the mid-high gamma band. To test these hypotheses, we will instantiate specific perturbations in the Ih conductance of FREM3 in our circuit model while leaving all other model parameters unperturbed. We expect that these tools, which will be shared with the scientific community, will facilitate the dialogue between the study of cellular and cell type properties, neurophysiological measurements, and mechanistic approaches to elucidate function in human brain circuits.

项目总结