Micro and Nanofabricated Devices for DNA Analysis
Micro and Nanofabricated Devices for DNA Analysis
批准号:
7192500
负责人:
Edward C COX
金额:
$68.5万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
1996
资助国家:
美国
项目状态:
已结题
起止时间:
1996-08-01 至 2009-02-28
关键词:
BindingCapitalChromosomesDNADNA SequenceDNA Sequence AnalysisDNA analysisDevelopmental BiologyDevicesElectrophoresisForensic MedicineFractionationFutureGelGenomeHeartHourIndustryMedicalMethodologyMolecularPatternQuartzRangeResearchSemiconductorsShapesSiliconSolutionsSpeedStretchingUniversitiesbasecostdayfunctional genomicsimprovedinsightnanonanofabricationnext generationportabilitysizetrend
中文摘要
描述(由申请人提供):
DNA分析和测序是所有基因组计划以及分子、细胞和发育生物学研究的核心。它是现代医学和法医实践的重要组成部分,在可预见的未来,分析和功能基因组学的这些趋势将继续加速。因此,人们早就认识到需要新的和不同的方法来测序和分析DNA。目前的方法相对缓慢,资本成本高,而且不便于移植。它们还需要熟练的技术人员,通常集中在大学,医疗和工业环境中的特殊单位。
在这里,我们提出了一些解决方案,DNA分析和测序的速度,成本和便携性。在硅和石英晶片上制造的设备能够处理FL到μ L的体积,并与分析速度秒,而不是分钟,小时,或天,进行了讨论,并提出了新的研究与这些设备。每个器件的核心是一个完全合成的分离基质,由各种尺寸和形状的SiO柱制成。中心思想是继续利用半导体工业的进步来制造这些器件。我们的方法利用了在纳米和微米尺度上图案化和蚀刻的最新进展,结合了对DNA分离物理基础的新见解。
英文摘要
DESCRIPTION (provided by applicant):
DNA analysis and sequencing is at the heart of all genome projects and most if not all research in molecular, cellular, and developmental biology. It is a major part of modern medical and forensic practice, and these trends in analytical and functional genomics will continue to accelerate for the foreseeable future. Thus the need for new and different ways to sequence and analyze DNA has long been recognized. Current methodologies are relatively slow, the capital costs are high, and they are not very portable. They also require skilled technical staff, usually concentrated in special units within University, Medical, and Industrial settings.
Here we propose some solutions to DNA analysis and sequencing speed, cost, and portability. Devices fabricated on silicon and quartz wafers capable of handling fL to mu L volumes, and with analysis speeds of seconds rather than minutes, hours, or days, are discussed and new research with these devices is proposed. At the heart of each device is an entirely synthetic separation matrix fabricated from SiO posts of various sizes and shapes. The central idea is to continue to exploit advances in the semiconductor industry to manufacture these devices. Our approach utilizes recent advances in patterning and etching on the nano and micro scale combined with new insights into the physical basis for DNA separations.
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DOI:
10.1364/oe.17.000080
发表时间:
2009-01
期刊:
Optics express
影响因子:
3.8
作者:
[B. Ungun;R. Prud’homme;Stephanie J Budijon;J. Shan;Shuang-fang Lim;Y. Ju;R. Austin]
通讯作者:
B. Ungun;R. Prud’homme;Stephanie J Budijon;J. Shan;Shuang-fang Lim;Y. Ju;R. Austin
lambda-Repressor oligomerization kinetics at high concentrations using fluorescence correlation spectroscopy in zero-mode waveguides.
使用零模波导中的荧光相关光谱分析高浓度下的 lambda 阻遏物寡聚动力学。
DOI:
10.1529/biophysj.104.052795
发表时间:
2005
期刊:
Biophysical journal
影响因子:
3.4
作者:
[Samiee,KT, Foquet,M, Guo,L, Cox,EC, Craighead,HG]
通讯作者:
Craighead,HG
DOI:
10.1103/physrevlett.89.198102
发表时间:
2002-05
期刊:
Physical review letters
影响因子:
8.6
作者:
[Yaojun Zhang;R. H. Austin;Jessica J. Kraeft;E. C. Cox;N. P. Ong]
通讯作者:
Yaojun Zhang;R. H. Austin;Jessica J. Kraeft;E. C. Cox;N. P. Ong
DOI:
10.1016/j.bpj.2008.09.040
发表时间:
2009
期刊:
Biophysical journal
影响因子:
3.4
作者:
[Wang,Yufang, Guo,Ling, Golding,Ido, Cox,EdwardC, Ong,NP]
通讯作者:
Ong,NP
Nonequilibrium separation of short DNA using nanoslit arrays.
使用纳米狭缝阵列非平衡分离短 DNA。
DOI:
10.1063/1.3183953
发表时间:
2009
期刊:
Journal of applied physics
影响因子:
3.2
作者:
[Strychalski,ElizabethA, Lau,HenryW, Archer,LyndenA]
通讯作者:
Archer,LyndenA
共 7 条
PROJECT 2
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批准号:7905592
-
项目类别:
-
资助金额:$24.48万
-
财政年份:2009
-
负责人:Edward C COX
-
依托单位:
CAAX Processing and Cell Signaling in Dictyostelium
-
批准号:7874859
-
项目类别:
-
资助金额:$25.38万
-
财政年份:2009
-
负责人:Edward C COX
-
依托单位:
CAAX Processing and Cell Signaling in Dictyostelium
-
批准号:7798229
-
项目类别:
-
资助金额:$30.25万
-
财政年份:2008
-
负责人:Edward C COX
-
依托单位:
CAAX Processing and Cell Signaling in Dictyostelium
-
批准号:7364385
-
项目类别:
-
资助金额:$31.96万
-
财政年份:2008
-
负责人:Edward C COX
-
依托单位:
CAAX Processing and Cell Signaling in Dictyostelium
-
批准号:8053728
-
项目类别:
-
资助金额:$29.95万
-
财政年份:2008
-
负责人:Edward C COX
-
依托单位:
CAAX Processing and Cell Signaling in Dictyostelium
-
批准号:7585188
-
项目类别:
-
资助金额:$30.55万
-
财政年份:2008
-
负责人:Edward C COX
-
依托单位:
Signaling and Complexity in Dictyostelium
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批准号:6730576
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项目类别:
-
资助金额:$29.63万
-
财政年份:2002
-
负责人:Edward C COX
-
依托单位:
Signaling and Complexity in Dictyostelium
-
批准号:6473887
-
项目类别:
-
资助金额:$34.58万
-
财政年份:2002
-
负责人:Edward C COX
-
依托单位:
Signaling and Complexity in Dictyostelium
-
批准号:6624349
-
项目类别:
-
资助金额:$29.63万
-
财政年份:2002
-
负责人:Edward C COX
-
依托单位:
Signaling and Complexity in Dictyostelium
-
批准号:6614060
-
项目类别:
-
资助金额:$0.47万
-
财政年份:2002
-
负责人:Edward C COX
-
依托单位:
A MULTI-USER GENE ARRAYER CORE FACILITY
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批准号:6291988
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项目类别:
-
资助金额:$16.23万
-
财政年份:2001
-
负责人:Edward C COX
-
依托单位:
ANALYSIS & PURIFICATION OF DNA IN MICROFABRICATED ARRAYS
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批准号:2024014
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项目类别:
-
资助金额:$11.77万
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财政年份:1997
-
负责人:Edward C COX
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依托单位:
ANALYSIS & PURIFICATION OF DNA IN MICROFABRICATED ARRAYS
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批准号:2857286
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项目类别:
-
资助金额:$12.19万
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财政年份:1997
-
负责人:Edward C COX
-
依托单位:
ANALYSIS & PURIFICATION OF DNA IN MICROFABRICATED ARRAYS
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批准号:2634844
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项目类别:
-
资助金额:$11.84万
-
财政年份:1997
-
负责人:Edward C COX
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依托单位:
Micro and Nanofabricated Devices for DNA Analysis
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批准号:6861068
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项目类别:
-
资助金额:$68.61万
-
财政年份:1996
-
负责人:Edward C COX
-
依托单位:
Micro and Nanofabricated Devices for DNA Analysis
-
批准号:6798495
-
项目类别:
-
资助金额:$4.38万
-
财政年份:1996
-
负责人:Edward C COX
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依托单位:
SEQUENCING DNA IN NANOFABRICATED ARRAYS
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批准号:6351432
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项目类别:
-
资助金额:$54.62万
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财政年份:1996
-
负责人:Edward C COX
-
依托单位:
Micro and Nanofabricated Devices for DNA Analysis
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批准号:6723651
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项目类别:
-
资助金额:$66.87万
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财政年份:1996
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负责人:Edward C COX
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依托单位:
SEQUENCING DNA IN NANOFABRICATED ARRAYS
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批准号:6053844
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项目类别:
-
资助金额:$53.29万
-
财政年份:1996
-
负责人:Edward C COX
-
依托单位:
Micro and Nanofabricated Devices for DNA Analysis
-
批准号:6575586
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项目类别:
-
资助金额:$66.6万
-
财政年份:1996
-
负责人:Edward C COX
-
依托单位:
海外基金