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DNA Microarray analysis of Clostridium botulinum

肉毒杆菌 DNA 微阵列分析

基本信息

批准号：
8206638
负责人：
WEI-JEN LIN
金额：
$ 10.54万
依托单位：
CALIFORNIA STATE POLY U POMONA
依托单位国家：
美国
项目类别：
财政年份：
2009
资助国家：
美国
起止时间：
2009-01-01 至 2013-12-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8206638
关键词：
Animals Award Bacteria Bacterial Physiology Biological Biology Bontoxilysin Botox Botulinum Toxin Type A Botulism Cancer Center Categories Cell physiology Cells Cities Clostridium Clostridium botulinum Clostridium botulinum type A Collaborations Communities Complex DNA Microarray Chip Data Development Discipline Educational process of instructing Environment Evolution Excision Expert Opinion Faculty Gene Cluster Gene Expression Gene Expression Profiling Gene Pool Gene Transfer Genes Genetic Transcription Genome Genomics Genotype Goals Grant Growth Health Hour Human Institutes Institution Knowledge Laboratories Laboratory Research Laboratory Study Link Maintenance Master&apos s Degree Mentors Microarray Analysis Molecular Biology Techniques Molecular Profiling Mutagenesis National Institute of Allergy and Infectious Disease Neurotoxins Organism Phase Phenotype Physiological Processes Physiology Procedures Process Production Proteins Reproduction spores Research Research Activity Research Institute Resources Role Scientist Serotyping Slide Students System Techniques Time Toxic effect Toxin Training Underrepresented Minority United States National Institutes of Health Universities Update Wages Wisconsin Work base biodefense botulinum career cell growth comparative genomics court deletion analysis experience functional genomics genome sequencing graduate student improved interest molecular assembly/self assembly mutant novel strategies novel therapeutics pathogen prevent programs research study response tool undergraduate student weapons

项目摘要

DESCRIPTION (provided by applicant): Clostridium botulinum is an anaerobic spore-forming bacterium that produces botulinum neurotoxin, the most potent protein toxin, which is known to cause botulism in humans and animals. There are seven serotypes of botulinum neurotoxins (A - G), produced from different strains of C. botulinum, that are physiologically and phylogenetically distinct. The neurotoxin gene cluster, containing the genes for the neurotoxin and the toxin associated proteins, is located on different parts of the genome in different C. botulinum strains, indicating that the gene cluster may be mobile. The overall goal of the PI's research is to understand the biology of the neurotoxin complex and the roles of these neurotoxins in the physiology and evolution of C. botulinum and related species. The study proposed here takes advantage of the recently available C. botulinum type A DNA microarray from NIH/NIAID sponsored Pathogen Functional Genomics Resource Center. We will use these microarray chips to examine, at the whole genome level, the role of neurotoxin complex production and the physiology and evolution of C. botulinum. In Specific Aim 1, we will perform comparative genomic microarray analyses to characterize the genomes of various C. botulinum type A strains and compare them to strains that did not acquire the toxin gene cluster. Genes unique to the toxin-producing strains will be identified and further characterized. In Specific Aim 2, we will determine the growth phase-dependent gene expression profiling of C. botulinum in response to the botulinum neurotoxin production levels. Using the microarray analyses, we will examine and compare the global gene transcriptional profiles between toxin-producing wild-type strains and toxin-deficient mutant strains. The impacts of the neurotoxin on cellular functions, growth and sporulation will be analyzed. The knowledge gained in the proposed studies will help us understand the biology of toxin production in C. botulinum with the intent of contributing to the body of knowledge about the neurotoxin and developing novel strategies to prevent botulism. PUBLIC HEALTH RELEVANCE: Clostridium botulinum produces botulinum neurotoxin, which is the most potent protein toxin known to cause botulism in humans and animals. Due to the potency of the toxin, the bacterium and its neurotoxins are classified as the "Category A" Select Agents for their potential use as biological weapons. The proposed studies allow further understanding of the biology of toxin production in C. botulinum with the intent of contributing to the body of knowledge about the neurotoxin and developing novel strategies to prevent botulism.

描述（由申请人提供）：肉毒杆菌是一种厌氧孢子形成细菌，产生肉毒杆菌神经毒素，这是最有效的蛋白质毒素，已知会导致人类和动物肉毒中毒。肉毒杆菌神经毒素（A - G）有七种血清型，由不同的肉毒杆菌菌株产生，在生理和系统发育上是不同的。在不同的肉毒杆菌菌株中，含有神经毒素和毒素相关蛋白基因的神经毒素基因簇位于基因组的不同部分，表明该基因簇可能是可移动的。PI研究的总体目标是了解神经毒素复合物的生物学以及这些神经毒素在肉毒杆菌和相关物种的生理和进化中的作用。本文提出的研究利用了NIH/NIAID赞助的病原体功能基因组学资源中心最近可用的肉毒杆菌A型DNA微阵列。我们将使用这些微阵列芯片在全基因组水平上检查神经毒素复合物的产生和肉毒杆菌的生理和进化的作用。在Specific Aim 1中，我们将进行比较基因组微阵列分析，以表征各种A型肉毒杆菌菌株的基因组，并将其与未获得毒素基因簇的菌株进行比较。产毒菌株特有的基因将被鉴定并进一步表征。在特异性目标2中，我们将确定肉毒杆菌生长阶段依赖的基因表达谱，以响应肉毒杆菌神经毒素的产生水平。使用微阵列分析，我们将检查和比较产生毒素的野生型菌株和缺乏毒素的突变菌株之间的全局基因转录谱。神经毒素对细胞功能、生长和产孢的影响将被分析。在拟议的研究中获得的知识将有助于我们了解肉毒杆菌毒素产生的生物学，旨在为神经毒素的知识体系做出贡献，并制定新的策略来预防肉毒杆菌中毒。公共卫生相关性：肉毒杆菌产生肉毒杆菌神经毒素，这是已知引起人类和动物肉毒中毒的最有效的蛋白质毒素。由于毒素的效力，这种细菌及其神经毒素被列为“A类”特选制剂，因为它们可能被用作生物武器。拟议的研究允许进一步了解肉毒杆菌毒素产生的生物学，旨在为神经毒素的知识体系做出贡献，并制定新的策略来预防肉毒杆菌中毒。