Transcriptional Networks Regulating Luminal Environment in the Epididymis

调节附睾管腔环境的转录网络

• 批准号: 8700439
• 负责人: ANN HARRIS
• 金额: $ 28.58万
• 依托单位: LURIE CHILDREN'S HOSPITAL OF CHICAGO
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-08-10 至 2016-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8700439
• 关键词: Address; Androgen Receptor; Bioinformatics; Biological Assay; Cells; Chloride Channels; Chromatin; Chromatin Structure; Chromosomes; Complex; Control Locus; Cyclic AMP; Cystic Fibrosis; Cystic Fibrosis Transmembrane Conductance Regulator; DNA-Binding Proteins; Data; Defect; Deoxyribonuclease I; Deoxyribonucleases; Development; Disease; Duct (organ) structure; Ejaculation; Elements; Enhancers; Environment; Epididymis; Epithelial Cells; Epithelium; Fertility; Gene Expression; Gene Expression Regulation; Genes; Genital system; Genomics; Goals; Hereditary Disease; Human; In Vitro; Inborn Genetic Diseases; Infertility; Inherited; Insulator Elements; Investigation; Ion Channel; Ion Transport; Ions; Left; Link; Male Genital Organs; Male Infertility; Maps; Mediating; Methods; Modification; Molecular; Molecular Conformation; Mutate; Mutation; Obstruction; Organ; Pathway interactions; Play; Process; Proteins; Recruitment Activity; Regulation; Regulator Genes; Regulatory Element; Reporter Genes; Research; Role; Series; Site; Small Interfering RNA; Sperm Maturation; Structure; Swimming; System; Techniques; Testis; Therapeutic Intervention; Tissues; Trans-Activators; Tube; Vas deferens structure; Water; base; birth control; cell type; chromatin immunoprecipitation; cis acting element; cohesin; genome-wide; in vivo; male; malformation; novel; reproductive; research study; solute; sperm cell; three dimensional structure; vector; zygote

DESCRIPTION (provided by applicant): Functional inactivation (by mutation) of the cystic fibrosis transmembrane conductance regulator (CFTR), a small conductance, cAMP activated chloride ion channel, leads to developmental defects that cause male infertility in humans. The mechanism by which inactivation of the CFTR gene causes infertility is poorly understood but is believed to be due in part to malformations or pathological changes in the male genital duct system. The goals of the proposed research are to decipher the transcriptional networks that regulate luminal environment in the epididymis, by building on our current understanding of the mechanisms regulating expression of the CFTR gene. Mutations in CFTR cause the devastating inherited disorder cystic fibrosis (CF). The CFTR channel makes an essential contribution to ion transport and the luminal environment in the epididymis and its loss causes obstruction and/or loss of the male genital ducts and subsequent infertility. The epididymis forms the proximal part of the excretory duct system of the male reproductive tract and is a complex organ that secretes and absorbs ions, water and inorganic solutes. Critically, it provides the correct luminal environment for normal sperm maturation. In normal epididymis the luminal environment is established and maintained through the functional cooperation of multiple ion channels, ion exchangers, solute carriers and transporters, though the mechanisms that coordinate the expression of these genes has not been well studied. In the first specific aim we will determine how modifications in the chromatin structure of the CFTR locus control its expression in the epididymis. We will evaluate the cis-acting enhancers and insulator elements that likely establish the looped conformation of the active locus and determine how trans-acting factors such as CTCF and cohesin influence this spatial organization. Moreover, we will investigate mechanisms and DNA- binding proteins that may suppress gene expression in cells where CFTR is less active or inactive. Experiments in the second specific aim will determine the transcriptional pathways that coordinate expression of ion channels, ion exchangers, transporters and solute carriers that interact with CFTR in the epididymis epithelium to establish and maintain the luminal environment. We will use a genome-wide approach (DNase- seq) to identify the cis-acting regulatory elements for genes encoding the proteins that contribute to ion and solute transport across the epididymal epithelium. Following mapping of these elements we will use combined bioinformatic and experimental approaches to identify the trans-acting factors that mediate the coordinated regulation of gene expression. Successful conduct of these studies will provide unique translational opportunities to modify male fertility. In disease states we may be able to reinstate the normal epididymal luminal environment and thereby restore fertility. Through modulation of this environment we may also be able to inhibit normal sperm maturation and thereby develop novel methods of birth control.

描述（由申请人提供）：囊性纤维化跨膜传导调节因子（CFTR）（一种小传导、cAMP激活的氯离子通道）的功能失活（通过突变）导致人类男性不育的发育缺陷。CFTR基因失活导致不孕的机制尚不清楚，但据信部分原因是男性生殖道系统的畸形或病理变化。拟议研究的目标是通过建立我们目前对CFTR基因表达调节机制的理解，破译调节附睾腔环境的转录网络。CFTR的突变导致毁灭性的遗传性疾病囊性纤维化（CF）。CFTR通道对附睾中的离子转运和腔环境做出重要贡献，并且其损失导致男性生殖导管的阻塞和/或损失以及随后的不育。附睾是男性生殖道排泄管系统的近端，是一个分泌和吸收离子、水和无机溶质的复杂器官。重要的是，它为正常的精子成熟提供了正确的管腔环境。在正常附睾中，管腔环境的建立和维持是通过多种离子通道、离子交换剂、溶质载体和转运蛋白的功能合作来实现的，尽管协调这些基因表达的机制尚未得到很好的研究。在第一个具体的目标，我们将确定如何在CFTR基因座的染色质结构的修改控制其在附睾中的表达。我们将评估可能建立活性位点的环状构象的顺式作用增强子和绝缘子元件，并确定反式作用因子如CTCF和粘附素如何影响这种空间组织。此外，我们将研究机制和DNA结合蛋白，可能会抑制基因表达的细胞中CFTR是不太活跃或不活跃。第二个具体目标的实验将确定转录途径，该转录途径协调与附睾上皮中CFTR相互作用以建立和维持腔环境的离子通道、离子交换剂、转运蛋白和溶质载体的表达。我们将使用全基因组的方法（DNase-seq），以确定顺式作用的调控元件的基因编码的蛋白质，有助于离子和溶质转运通过附睾上皮。这些元素的映射后，我们将使用相结合的生物信息学和实验方法，以确定介导的协调调控基因表达的反式作用因子。这些研究的成功进行将为改变男性生育力提供独特的转化机会。在疾病状态下，我们可能能够恢复正常的附睾腔环境，从而恢复生育能力。通过调节这种环境，我们也可以抑制正常的精子成熟，从而开发新的节育方法。