Small and Mechanosensitive Membrane Proteins Studied with DNA-based Tools

使用基于 DNA 的工具研究小型机械敏感膜蛋白

• 批准号: 10659021
• 负责人: Thorsten Lars Schmidt
• 金额: $ 37.34万
• 依托单位: KENT STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-09-01 至 2026-06-30
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10659021
• 关键词: Biophysics; Cell Adhesion; Cell membrane; Cell physiology; Cells; Chemicals; Communicable Diseases; Communication; Computers; DNA; DNA chemical synthesis; Disease; Environment; FDA approved; Genetic; Human; Knowledge; Lipids; Membrane; Membrane Lipids; Membrane Proteins; Molecular; Molecular Structure; Nanostructures; Nature; Nutrient; Pharmaceutical Preparations; Pharmacology; Physical environment; Physiological; Play; Proteins; Research; Role; Salts; Shapes; Stress; Structure; Surface; Technology; Water; chemical property; chemical synthesis; nanodisk; novel; physical property; protein function; protein structure; self assembly; structural biology; tool; virology

PROJECT SUMMARY Membrane proteins (MPs) are molecules that can be found in membranes on the surface and the inside of all cells. They enable vital cellular functions such as transport of water, salts and nutrients across the membranes, sensing of the chemical and physical environment of the cell, communication between cells, cell adhesion and energy conversion. MPs play a role in every physiological and infectious disease and 60% of all FDA approved drug molecules target them. To understand how exactly these proteins function, what role they play in different diseases, or to simulate in a computer how new potential drugs would interact with MPs, the exact molecular structures of the MPs need to be discovered first. As MPs are naturally embedded in lipid membranes, they are not soluble in water and it is therefore much more challenging to solve their molecular structures compared water-soluble proteins. Consequently, the molecular structures of less than 100 out of ~8,000 human MPs are known. This proposal will provide new DNA-based tools that will overcome many of these challenges for MP structure determination. For this, DNA molecules without a genetic function are chemically synthesized and self-assembled into ring-shaped DNA nanostructures. These rings can then be filled with lipids and MPs, thus making MPs soluble in water. Moreover, these DNA-lipid nanodiscs provide a native cell-membrane-like environment for the MP, which is important to keep MPs in their native physiological state. By taking advantage of the programmable nature of chemical DNA synthesis, and self-assembly, the size, chemical and physical properties of these nanodiscs can be controlled with a precision and ease that alternative technologies do not provide. This will be particularly useful for solving the structures of small MPs or mechanosensitive MPs, which are actuated by molecular forces and stress in cell membranes. It is expected that the DNA-based molecular tools from this research will overcome current obstacles for MP structure determination and provide functionalities that current molecular tools cannot offer. This research will therefore enable discoveries in structural biology, pharmacology and virology, and thereby enhance the understanding and treatment of MP-associated diseases.

项目总结 膜蛋白(MPS)是存在于膜表面和膜上的分子。 在所有细胞的内部。它们使重要的细胞功能，如水、盐和营养物质的运输 穿过细胞膜，感知细胞的化学和物理环境， 细胞间的通讯、细胞的黏附和能量的转换。国会议员在每一个 生理和传染病，以及FDA批准的所有药物分子中有60%针对它们。 为了了解这些蛋白质的确切功能，它们在不同疾病中扮演什么角色，或者 在计算机中模拟新的潜在药物如何与MPS相互作用，MPS是确切的分子 首先需要发现MPS的结构。因为MPS天然地嵌入到脂质中 膜，它们不溶于水，因此解决它们的 比较了水溶性蛋白质的分子结构。因此，它的分子结构 在8000名人类议员中，只有不到100人是已知的。 这项提议将提供新的基于DNA的工具，以克服这些挑战中的许多 MP结构测定。为此，没有遗传功能的DNA分子是化学上的 合成并自组装成环状DNA纳米结构。然后这些环就可以 充满脂质和MPS，从而使MPS溶于水。此外，这些DNA-脂质纳米盘 为MP提供天然的细胞膜状环境，这对MPS的保持很重要 他们天生的生理状态。通过利用化学DNA的可编程性质 合成和自组装，这些纳米盘的尺寸、化学和物理特性可以 以替代技术所不能提供的精度和简易性进行控制。这将是 特别适用于解决小MPS或机械敏感型MPS的结构， 由细胞膜中的分子力和应力驱动。 预计这项研究的基于DNA的分子工具将克服目前的 为MP结构确定设置障碍，并提供当前分子工具 不能提供。因此，这项研究将使结构生物学、药理学 和病毒学，从而加强对MP相关疾病的了解和治疗。

项目成果

Block Copolymer Micellization of DNA Origami Promotes Solubility in Organic Solvents.

• DOI: 10.1021/acs.langmuir.2c01508
• 发表时间: 2022-09-27
• 期刊: LANGMUIR
• 影响因子: 3.9
• 作者: Agarwal, Nayan P.;Chandrasekhar, Soumya;Prakash, Praneetha Sundar;Joffroy, Kristin;Schmidt, Thorsten L.
• 通讯作者: Schmidt, Thorsten L.