LANGEVIN DYNAMICS SIMULATION OF LIPID KINASE MUTATIONS IN CANCER
LANGEVIN DYNAMICS SIMULATION OF LIPID KINASE MUTATIONS IN CANCER
批准号:
8364284
负责人:
Rachel Karchin
金额:
$0.11万
依托单位国家:
美国
项目类别:
财政年份:
2011
资助国家:
美国
项目状态:
已结题
起止时间:
2011-09-15 至 2013-07-31
关键词:
Amino AcidsAutomobile DrivingBiomedical ResearchFundingGrantGrowthHigh Performance ComputingHomologous GeneLipidsMalignant NeoplasmsMolecularMutationNational Center for Research ResourcesPIK3CA genePIK3CG genePhosphotransferasesPlayPrincipal InvestigatorProteinsResearchResearch InfrastructureResourcesRoentgen RaysRoleRunningSourceStructureUnited States National Institutes of Healthcostlipid Imalignant breast neoplasmmutantsimulation
中文摘要
这个子项目是许多利用资源的研究子项目之一
由NIH/NCRR资助的中心拨款提供。子项目的主要支持
而子项目的主要调查员可能是由其他来源提供的,
包括其它NIH来源。 列出的子项目总成本可能
代表子项目使用的中心基础设施的估计数量,
而不是由NCRR赠款提供给子项目或子项目工作人员的直接资金。
脂质激酶突变在驱动癌症生长中起重要作用。我们建议探索潜在的分子机制的氨基酸改变突变的乳腺癌中看到的I类脂质激酶PIK 3CA使用其同系物,I类脂质激酶PIK 3CG的X-射线晶体结构。我们请求资源运行10 ns朗之万动力学模拟7个突变体和3个野生型结构与CHARMM阐明的结构变化,产生异常,在癌症中的过度活跃的蛋白质。
英文摘要
This subproject is one of many research subprojects utilizing the resources
provided by a Center grant funded by NIH/NCRR. Primary support for the subproject
and the subproject's principal investigator may have been provided by other sources,
including other NIH sources. The Total Cost listed for the subproject likely
represents the estimated amount of Center infrastructure utilized by the subproject,
not direct funding provided by the NCRR grant to the subproject or subproject staff.
Lipid kinase mutations play an important role in driving cancer growth. We propose to explore the underlying molecular mechanisms of amino acid changing mutations seen in breast cancers in the Class I lipid kinase PIK3CA using the X-ray crystal structure of its homolog, the Class I lipid kinase PIK3CG. We request resources to run 10ns Langevin dynamics simulations of seven mutant and three wild-type structures with CHARMM to elucidate the structural changes that produce an abnormal, hyperactive protein in cancer.
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会议论文
OpenCRAVAT: Informatics Tools for High-Throughput Analysis of Cancer Mutations
-
批准号:10418133
-
项目类别:
-
资助金额:$67.97万
-
财政年份:2022
-
负责人:Rachel Karchin
-
依托单位:
OpenCRAVAT: Informatics Tools for High-Throughput Analysis of Cancer Mutations
-
批准号:10617371
-
项目类别:
-
资助金额:$65.31万
-
财政年份:2022
-
负责人:Rachel Karchin
-
依托单位:
Informatics Tools for High-throughput Analysis of Cancer Mutations
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批准号:9094143
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项目类别:
-
资助金额:$46.28万
-
财政年份:2016
-
负责人:Rachel Karchin
-
依托单位:
Informatics Tools for High-throughput Analysis of Cancer Mutations
-
批准号:8606625
-
项目类别:
-
资助金额:$29.0万
-
财政年份:2013
-
负责人:Rachel Karchin
-
依托单位:
Informatics Tools for High-throughput Analysis of Cancer Mutations
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批准号:8735910
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项目类别:
-
资助金额:$31.71万
-
财政年份:2013
-
负责人:Rachel Karchin
-
依托单位:
Tools for detecting biologically important sequence variation in cancer
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批准号:8333965
-
项目类别:
-
资助金额:$11.37万
-
财政年份:2011
-
负责人:Rachel Karchin
-
依托单位:
AN INTEGRATED APPROACH TO PREDICTING ONCOGENIC MUTATIONS IN NOVEL BREAST CANCER
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批准号:8364289
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项目类别:
-
资助金额:$0.11万
-
财政年份:2011
-
负责人:Rachel Karchin
-
依托单位:
Tools for detecting biologically important sequence variation in cancer
-
批准号:8113745
-
项目类别:
-
资助金额:$26.97万
-
财政年份:2011
-
负责人:Rachel Karchin
-
依托单位:
LANGEVIN DYNAMICS SIMULATION OF LIPID KINASE MUTATIONS IN CANCER
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批准号:8171866
-
项目类别:
-
资助金额:$0.11万
-
财政年份:2010
-
负责人:Rachel Karchin
-
依托单位:
AN INTEGRATED APPROACH TO PREDICTING ONCOGENIC MUTATIONS IN NOVEL BREAST CANCER
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批准号:8171895
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项目类别:
-
资助金额:$0.11万
-
财政年份:2010
-
负责人:Rachel Karchin
-
依托单位:
AN INTEGRATED APPROACH TO PREDICTING ONCOGENIC MUTATIONS IN NOVEL BREAST CANCER
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批准号:7956356
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项目类别:
-
资助金额:$0.08万
-
财政年份:2009
-
负责人:Rachel Karchin
-
依托单位:
LANGEVIN DYNAMICS SIMULATION OF LIPID KINASE MUTATIONS IN CANCER
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批准号:7956250
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项目类别:
-
资助金额:$0.08万
-
财政年份:2009
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负责人:Rachel Karchin
-
依托单位:
Tools for Large-Scale Analysis of Driver Pathways
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批准号:7540176
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项目类别:
-
资助金额:$22.14万
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财政年份:2008
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负责人:Rachel Karchin
-
依托单位:
LANGEVIN DYNAMICS SIMULATION OF LIPID KINASE MUTATIONS IN CANCER
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批准号:7723391
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项目类别:
-
资助金额:$0.05万
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财政年份:2008
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负责人:Rachel Karchin
-
依托单位:
Tools for Large-Scale Analysis of Driver Pathways
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批准号:7684197
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项目类别:
-
资助金额:$18.45万
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财政年份:2008
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负责人:Rachel Karchin
-
依托单位:
Predicting Impact of Mutations on Proteins
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批准号:6837928
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项目类别:
-
资助金额:$4.3万
-
财政年份:2004
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负责人:Rachel Karchin
-
依托单位:
Predicting Impact of Mutations on Proteins
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批准号:6949745
-
项目类别:
-
资助金额:$4.83万
-
财政年份:2004
-
负责人:Rachel Karchin
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依托单位:
海外基金