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A Universal DNA Hemimethylation Probe

通用 DNA 半甲基化探针

基本信息

批准号：
10038450
负责人：
ALEX BORTVIN
金额：
$ 44.42万
依托单位：
CARNEGIE INSTITUTION OF WASHINGTON, D.C.
依托单位国家：
美国
项目类别：
财政年份：
2020
资助国家：
美国
起止时间：
2020-08-01 至 2023-07-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/10038450
关键词：
Address Affinity Chromatography Aging Binding Binding Sites Cell division Cells Chimeric Proteins Chromatin Chromosomes Complement Complex CpG dinucleotide Cytosine DNA DNA Binding DNA Methylation DNA Modification Process DNA Probes DNA biosynthesis Defect Development Disease Elements Embryo Epigenetic Process Family Genome Genomic Imprinting Germ Cells Goals Health Human Immunodeficiency and Cancer Immunofluorescence Immunologic In Vitro Malignant Neoplasms Mammals Meiosis Methodology Methods Methylation Methyltransferase Modification Mus Nature Pattern Positioning Attribute Proteins Reagent Recombinants Research Ring Finger Domain Role Somatic Cell Specificity Tertiary Protein Structure Testing Transgenic Mice Transgenic Organisms Tube Vertebrates Visualization base cohesin embryonic stem cell epigenetic regulation fascinate genetic information genome-wide homologous recombination in vivo inducible gene expression innovation interest male mouse genome mutant novel preimplantation prevent tool

项目摘要

PROJECT SUMMARY Cytosine DNA methylation is a post-replicative epigenetic modification that regulates the organization and expression of the genetic information. Deficiencies in DNA methylation associate with numerous diseases, most notably genomic imprinting disorders, immunodeficiencies, and cancers. In the vertebrates, cytosine methylation happens in the CpG context. DNA replication produces a short-lived hemimethylated DNA intermediate. Due to its fleeting nature and the lack of adequate tools, DNA hemimethylation remains underexplored. Intriguingly, recent studies revealed fascinating examples of persistent DNA hemimethylation. These studies suggest a broader spectrum of functional states of DNA methylation. To begin to address this gap in our understanding of this potentially crucial element of the epigenetic regulation of the genome, we propose to adapt a SET- and RING Finger-Associated (SRA) domain of UHRF1 to generate a DNA hemimethylation probe for in vitro and in vivo studies. The compact SRA domain is self-sufficient to bind hemimethylated DNA with high specificity. To accomplish the overarching goal of this proposal, we will first produce recombinant SRA domain proteins and develop methods for the isolation and visualization of hemimethylated DNA in complex genomes in vitro. To study DNA hemimethylation in vivo, we will express a fusion protein comprised of the SRA domain and mScarlet fluorescent protein in mouse embryos, embryonic stem cells, and transgenic mice. We will use live imagining of cells with hemimethylated DNA to validate chromatin localization patterns and dynamics of the SRA-mScarlet fusion protein. This research will enhance our understanding of the epigenetic regulation of the genome in development and disease.

项目摘要胞嘧啶DNA甲基化是一种复制后的表观遗传修饰，它调节细胞的组织和基因信息的表达。DNA甲基化缺陷与许多疾病有关，最显著的是基因组印记疾病、免疫缺陷和癌症。在脊椎动物中，胞嘧啶甲基化发生在CpG背景下。DNA复制产生一个短暂的半甲基化DNA 中间体由于其短暂的性质和缺乏足够的工具，DNA半甲基化仍然存在探索不足有趣的是，最近的研究揭示了持续DNA半甲基化的迷人例子。这些研究表明，DNA甲基化的功能状态范围更广。为了开始解决这个问题我们对基因组表观遗传调控的这一潜在关键因素的理解存在差距，我们我建议修改UHRF 1的SET和RING指相关（SRA）结构域以产生DNA 用于体外和体内研究半甲基化探针。紧SRA域是自足的，特异性高的半甲基化DNA。为了实现本提案的总体目标，我们将首先生产重组SRA结构域蛋白，并开发分离和可视化半甲基化DNA在体外复杂基因组中的作用。为了在体内研究DNA半甲基化，我们将表达一种在小鼠胚胎、胚胎发育和胚胎发育中，干细胞和转基因小鼠。我们将使用带有半甲基化DNA的细胞的活体成像来验证 SRA-mScarlet融合蛋白的染色质定位模式和动力学。这项研究将提高我们对发育和疾病中基因组的表观遗传调控的理解。