Optimization and validation of a biomarker panel for risk stratification in Barrett's esophagus
用于巴雷特食管风险分层的生物标志物组的优化和验证
基本信息
- 批准号:10584271
- 负责人:
- 金额:$ 64.4万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2022
- 资助国家:美国
- 起止时间:2022-12-28 至 2027-11-30
- 项目状态:未结题
- 来源:
- 关键词:AmericanAneuploidyAreaBarrett EsophagusBenignBile RefluxBiological AssayBiological MarkersBiometryBiopsyCase/Control StudiesChronicClinicalClinical ManagementCollaborationsCollectionComputational BiologyComputational TechniqueCoupledCredentialingDNA Sequence AlterationDetectionDevelopmentDevicesDiagnosisDiseaseDysplasiaEarly DiagnosisEndoscopic BiopsyEndoscopyEpitheliumEsophageal AdenocarcinomaEsophageal TissueEsophagusEvaluationFunctional disorderFundingGastroenterologistGastroenterologyGastroesophageal reflux diseaseGenomeGenomicsGoalsHeadHigh PrevalenceHistologicIncidenceInstitutionIntestinesLeftLesionMalignant NeoplasmsMalignant neoplasm of esophagusMethylationModelingMutationMutation DetectionOutcomePathologyPatientsPersonsPloidiesPositioning AttributePrecancerous ConditionsProceduresProcessProgress ReportsProspective cohortPublishingRecommendationResearchResourcesRiskSamplingSideStratificationStructureTP53 geneTalentsTestingTimeTissue BanksTissue SampleTissuesValidationadvanced diseasebiomarker identificationbiomarker panelcancer genomicsclinical implementationclinically relevantclinically significantcohortcostcost effectivedisorder riskepigenomicsgenomic biomarkerhigh riskimprovedinnovationmethylation biomarkernovelnovel therapeuticspatient populationpatient stratificationpredictive markerpremalignantpreventprogression riskresponserisk stratificationscreeningsubclonal heterogeneitysurveillance strategytargeted sequencingtool
项目摘要
PROJECT SUMMARY: Intestinalization of the esophagus, termed Barrett’s esophagus (BE), is thought to
develop in response to chronic acid and bile reflux and carries great clinical significance because it is the
precursor to esophageal adenocarcinoma (EAC). The incidence of BE is quite high, estimated to be found in at
least 1:100 people. While relatively few with BE progress to cancer there is great importance to being able to
detect and treat those at risk of progression as EAC is an aggressive cancer with potential for early spread.
Efforts to screen for high-risk disease in those with BE have, to date, not been very successful. Therefore,
there is profound need to define the process by which BE progresses into EAC, to develop biomarkers to
diagnose early progression and assess progression risk in BE tissues as well as to develop novel therapies for
treatment. The objective of this R01 proposal is to investigate the ability of biomarkers to identify BE patients at
high risk of progression. Using results from two externally funded genomic studies in non-dysplastic BE
(NDBE) and BE with low-grade dysplasia (LGD) and previously published results, we will compare biomarkers
and determine an optimized combination for risk stratification in two prospective cohorts including patients with
NDBE or LGD. We will then validate our risk stratification assay in an independent US cohort. Finally, we will
compare our genomic biomarker panel results in paired biopsy and brush samples. A unique collaboration
between the PI Dr. Stachler, expert gastroenterologist (Dr. J Bergman), a talented computational biologist (Dr.
CZ Zhang), and an expert biostatistician (Dr. K Zwinderman) along with key collaborators allows a truly
innovated study to be performed. This will be accomplished using an unprecedented collection of clinically
derived samples, a highly optimized targeted sequencing panel, and novel computational approaches that
allow a wide array of information to be determined in a cost effective, clinically relevant manor.
Aim 1: Identify a set of genomic biomarkers highly predictive of progression in biopsies from a
prospective cohort of patients diagnosed with NDBE and LGD and assess whether the addition of
methylation-based biomarkers improves stratification. For clinical implementation all biomarkers should be
compared head to head in order to determine an optimized combination of biomarkers for risk stratification.
Aim 2: Validate the risk stratification assay in a multi-institutional cohort of patients with a baseline
diagnosis of NDBE or LGD. For clinical implementation, it is vital to validate any risk stratification assay on
completely independent cohorts looking at clinically relevant time points.
Aim 3: Determine if brush-based sampling devices improve biomarker detection over standard
endoscopic biopsies. Broad sampling of the BE epithelium may allow for increased rates of detection for
genomic or methylation biomarkers, therefore we will determine if samples from a brushed based device can
better risk stratify patients compared to standard biopsies.
项目总结:食管肠化,称为巴雷特食管(BE),被认为是一种
项目成果
期刊论文数量(0)
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Matthew D Stachler其他文献
Matthew D Stachler的其他文献
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{{ truncateString('Matthew D Stachler', 18)}}的其他基金
Early TP53 Mutations and Genomic Doubling as a Novel Path for Barrett's Esophagus Progression
早期 TP53 突变和基因组加倍是巴雷特食管进展的新途径
- 批准号:
9086012 - 财政年份:2016
- 资助金额:
$ 64.4万 - 项目类别:
Early TP53 Mutations and Genomic Doubling as a Novel Path for Barrett's Esophagus Progression
早期 TP53 突变和基因组加倍是巴雷特食管进展的新途径
- 批准号:
9666941 - 财政年份:2016
- 资助金额:
$ 64.4万 - 项目类别:
Early TP53 Mutations and Genomic Doubling as a Novel Path for Barrett's Esophagus Progression
早期 TP53 突变和基因组加倍是巴雷特食管进展的新途径
- 批准号:
9262219 - 财政年份:2016
- 资助金额:
$ 64.4万 - 项目类别:
Early TP53 Mutations and Genomic Doubling as a Novel Path for Barrett's Esophagus Progression
早期 TP53 突变和基因组加倍是巴雷特食管进展的新途径
- 批准号:
9929248 - 财政年份:2016
- 资助金额:
$ 64.4万 - 项目类别:
Early TP53 Mutations and Genomic Doubling as a Novel Path for Barrett's Esophagus Progression
早期 TP53 突变和基因组加倍是巴雷特食管进展的新途径
- 批准号:
10380456 - 财政年份:2016
- 资助金额:
$ 64.4万 - 项目类别:
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