HISTONE MODIFICATIONS GUIDING HIV INTEGRATION

指导 HIV 整合的组蛋白修饰

• 批准号: 10619868
• 负责人: Ross C. Larue
• 金额: $ 19.69万
• 依托单位: OHIO STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2023
• 资助国家: 美国
• 起止时间: 2023-08-11 至 2025-07-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10619868
• 关键词: Acquired Immunodeficiency Syndrome; Affinity Chromatography; Anti-Retroviral Agents; Binding; Binding Proteins; Bioinformatics; C-terminal; Cells; ChIP-seq; Chromatin; Complex; Data; Databases; Disease; Elements; Encyclopedia of DNA Elements; Ensure; Event; Fluorescence; Fluorescence Microscopy; Fluorescence Resonance Energy Transfer; Gene Expression; Genes; Genetic Transcription; Genome; Genomics; Goals; HIV; Histone H3; Histones; In Vitro; Individual; Infection; Integrase; Intercistronic Region; Kinetics; Location; Lysine; Magnetism; Maps; Mass Spectrum Analysis; Mediating; Methylation; Modality; N-terminal; Nucleosomes; PWWP Domain; Patients; Persons; Post-Translational Protein Processing; Process; Production; Proteins; Provirus Integration; Proviruses; Recombinants; Role; Site; Technology; Therapeutic; Time; Transcription Coactivator; Transcription Initiation Site; Viral; Viral Genome; Virus; Virus Diseases; Virus Integration; antiretroviral therapy; cell type; cellular engineering; cofactor; histone methylation; histone modification; in vivo; integration site; novel; preference; single molecule; therapeutic target; transcriptional coactivator p75; viral DNA

HISTONE MODIFICATIONS GUIDING HIV INTEGRATION PROJECT SUMMARY / ABSTRACT Human immunodeficiency virus (HIV-1) is the causative agent of acquired immunodeficiency syndrome (AIDS) with ~36.7 million people currently infected worldwide. Integration of the viral genome establishes an irreversible insertion of the proviral sequence into the host chromatin. The integrated genome ensures effective HIV gene expression and ultimately virus production or the establishment of latency where the provirus remains dormant for an extended time. Retroviral integration is mediated by the viral integrase (IN) protein that is bound to the direct-repeated ends of the viral DNA genome, along with additional cellular and viral co-factors that direct integration to host chromatin sites. The overarching goal of this proposal is to understand how viral integration is targeted to chromatin by histone post translational modifications (PTMs), and how cellular factors that tightly control the localization of these PTMs influence target site choice. LEDGF/p75 is a key cellular transcription co-activator that binds to HIV-1 IN via a C-terminal integrase binding domain (IBD). The N-terminus of LEDGF/p75 contains a PWWP domain that is expected to recognize histone methylated lysine PTMs. Bimodal tethering of the HIV-1 integration complex (intasome) to a transcription-related histone PTM has been proposed to account for the observed ~76% of chromosomal integrations that occur in actively transcribed genes. LEDGF/p75 purportedly targets HIV-1 to nucleosomes containing trimethylation of histone H3 lysine 36 residues (H3K36me3). However, H3K36me3 is most often found at the 3’ ends of transcribed genes, whereas HIV-1 integrates more frequently toward the 5’ ends of genes. Bioinformatic correlations of HIV-1 integration sites with histone PTMs is limited by the data available in the Encyclopedia of DNA Elements (ENCODE) database. Notably absent from ENCODE are genomic maps of the H3K36me2 PTM in any cell type. We performed a ChIP-Seq analysis of H3K36me2 and determined that it was commonly found near the 5’ transcription start site of genes. Moreover, we found that HIV-1 integration sites correlate better with the location of H3K36me2 than H3K36me3. We propose to examine the role of H3K36me2 and H3K36me3 with two Specific Aims. Aim 1 will expand the current understanding of H3K36 methylation and its connection to HIV-1 integration efficiency and site selection in vivo. Aim 2 will probe the influence of H3K36me2 and H3K36me3 on HIV-1 integration in vitro. Our approaches will include technologically advanced mass spectrometry, integration site mapping, and single molecule fluorescence microscopy. The results of these studies will clearly determine the role of H3K36me2 and H3K36me3 during HIV-1 integration.

指导HIV整合的组蛋白修饰 项目总结/摘要 人类免疫缺陷病毒（HIV-1）是获得性免疫缺陷综合征（AIDS）的病原体 目前全球约有3670万人感染。病毒基因组的整合建立了一个不可逆的 前病毒序列插入宿主染色质。整合的基因组确保有效的HIV基因 表达并最终产生病毒或建立潜伏期，其中前病毒保持休眠 很长一段时间逆转录病毒整合由病毒整合酶（IN）蛋白介导，所述病毒整合酶（IN）蛋白结合至逆转录病毒载体。 病毒DNA基因组的直接重复末端，沿着另外的细胞和病毒辅因子， 整合到宿主染色质位点。这项提案的首要目标是了解病毒整合是如何 通过组蛋白翻译后修饰（PTM）靶向染色质，以及细胞因子如何紧密地 控制这些PTM的定位影响靶位点的选择。 LEDGF/p75是通过C-末端整合酶结合与HIV-1 IN结合的关键细胞转录共激活因子 结构域（IBD）。LEDGF/p75的N-末端含有预期识别组蛋白的PWWP结构域 甲基化赖氨酸PTM。HIV-1整合复合物（整合体）与转录相关蛋白的双峰连接 已经提出组蛋白PTM解释了观察到的约76%的染色体整合，这些染色体整合发生在 活跃转录的基因LEDGF/p75据称将HIV-1靶向含有三甲基化的 组蛋白H3赖氨酸36个残基（H3 K36 me 3）。然而，H3 K36 me 3最常出现在3'末端 转录基因，而HIV-1整合更频繁地向5'端的基因。 HIV-1整合位点与组蛋白PTM的生物信息学相关性受到文献中可用数据的限制。 Encyclopedia of DNA Elements（ENCODE）数据库。值得注意的是，ENCODE中缺少 任何细胞类型中的H3 K36 me 2 PTM。我们对H3 K36 me 2进行了ChIP-Seq分析，并确定它是 通常在基因的5'转录起始位点附近发现。此外，我们发现HIV-1整合位点 与H3 K36 me 3相比，与H3 K36 me 2的位置相关性更好。我们建议研究H3 K36 me 2的作用 和H3 K36 me 3，具有两个特定目的。目的1将扩大目前对H3 K36甲基化的理解， 其与HIV-1整合效率和体内位点选择的关系。目标2将探讨 H3 K36 me 2和H3 K36 me 3对HIV-1体外整合的影响。我们的方法将包括技术先进的 质谱、整合位点作图和单分子荧光显微术。的结果予以 研究将清楚地确定H3 K36 me 2和H3 K36 me 3在HIV-1整合过程中的作用。