Genome-wide and Linkage Study of Quantitative Emphysema Phenotypes

定量肺气肿表型的全基因组和连锁研究

• 批准号: 7833115
• 负责人: R Graham BARR
• 金额: $ 49.99万
• 依托单位: COLUMBIA UNIVERSITY HEALTH SCIENCES
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-09-01 至 2011-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7833115
• 关键词: Accounting; African; African American; Age; Alveolar wall; American; Area; Asians; Atherosclerosis; Cardiac; Cardiovascular Diseases; Cause of Death; Chinese People; Chronic Obstructive Airway Disease; Cigarette; Clinical; Cohort Studies; Consent; DNA; Data; Disease; Disease Pathway; Enrollment; Ethnic group; European; Family; Family Study; Frequencies; Future; Genes; Genetic; Genetic Markers; Genetic Risk; Genome; Genotype; Hispanics; Lead; Lung; Measures; Minority; Modification; Mutation; Participant; Phenotype; Prevalence; Preventive Medicine; Principal Investigator; Protocols documentation; Pulmonary Emphysema; Research; Risk; Risk Factors; Role; Sample Size; Sampling; Scanning; Smoke; Smoker; Smoking; Smoking History; Stratification; Stroke; Testing; Therapeutic; United States; Variant; X-Ray Computed Tomography; base; case control; clinical care; cohort; cost; design; genetic analysis; genetic variant; genome wide association study; genome-wide linkage; insight; non-smoker; novel; population based; programs; response; therapeutic target

DESCRIPTION (provided by applicant): This application is in response to Challenge Area 04-HL-104, "Perform secondary analyses of existing data to answer important clinical and preventive medicine research questions." The specific topic is #8, "Analysis of genetic markers related to risk factors and disease in relation to their genetic and environmental context and how these may be used to inform preventive medicine and clinical care. Together, emphysema and chronic obstructive pulmonary disease (COPD) will soon surpass stroke as the third leading cause of death in the United States, with the largest increase occurring in Americans of non-European ancestry. Emphysema is defined by a permanent enlargement of airspaces with destruction of alveolar walls; COPD, by airflow limitation that is not fully reversible. Mutations in the SERPINA1 gene cause panlobular emphysema but account for <1% of cases. Smoking is the major environmental cause centrilobular emphysema, but less than one third of heavy smokers develop either disease, which may suggest a genetic risk. However, no other putatively causal genes have been confirmed for emphysema, in part due to a lack of quantitative measures of emphysema in cohorts with dense genotyping. The Multi-Ethnic Study of Atherosclerosis (MESA) and MESA-Family Studies performed cardiac computed tomography (CT) scans for 6,814 participants age 45-84 years free of clinical cardiovascular disease and 595 families (2077 participants). The MESA-Family Study performed linkage studies for subclinical atherosclerosis, and one million SNP genome wide association study (GWAS) data will be available for both studies. The MESA-Lung Study measured and validated quantitative emphysema phenotypes on the lung regions of cardiac CT scans for 3,965 MESA participants. This sample size, however, is adequate to detect only large associations at GWAS levels of significance. We therefore propose to measure quantitative emphysema phenotypes on cardiac CT scans for the other 2,579 MESA participants and 2,077 MESA Family Study participants. We will then use existing genome- wide linkage and GWAS data among 595 families of African and Hispanic ancestry and 6,544 participants of African, Hispanic, European or Chinese ancestry to conduct statistical genetic analysis of: 1) family-based linkage and GWAS for quantitative emphysema phenotypes in the MESA-Family Study and 2) GWAS analyses for quantitative emphysema phenotypes in the MESA cohort before and after stratification by smoking history. This application proposes to combine data from the MESA, MESA Lung and MESA Family Studies and add selective new data to perform novel, highly cost-effective research on the genetic basis of emphysema among 8,120 participants in a population-based cohort and family study. The proposed research on quantitative emphysema phenotypes is unique in utilizing a cohort rather than case-control design, including non-smokers, and enrolling minority ethnic groups in which the prevalence of the disease in rising most rapidly. The proposed aims will examine the role of DNA variation in the genome and modification by smoking history to identify risk variants and provide insight for future functional and genotype/phenotype research that will disclose disease pathways, and therapeutic targets. Emphysema will soon overtake stroke as the third leading cause of death in the US, with the greatest increase among African-Americans and Asians. Therapeutic options are few, in part due to a limited understand of its causes. Smoking causes some types of emphysema but most smokers do not develop emphysema, which might suggest a genetic risk. This study proposes to measure emphysema on existing CT scans in a large multiethnic cohort and family study (n=8,120) with 1 million SNP genome-wide and linkage data to examine genetic risk for emphysema, which may lead to a better understanding of risk for emphysema.

描述（由申请人提供）：本申请是对挑战领域04-HL-104“对现有数据进行二次分析，以回答重要的临床和预防医学研究问题”的回应。具体的主题是#8，“分析与风险因素和疾病相关的遗传标记，与其遗传和环境背景有关，以及如何将其用于预防医学和临床护理。肺气肿和慢性阻塞性肺病（COPD）将很快超过中风，成为美国第三大死亡原因，其中非欧洲血统的美国人增加最多。肺气肿的定义是永久性的气腔扩大和肺泡壁的破坏;慢性阻塞性肺病的定义是不完全可逆的气流限制。SERPINA 1基因突变引起全小叶性肺气肿，但占病例的<1%。吸烟是导致小叶中心型肺气肿的主要环境因素，但只有不到三分之一的重度吸烟者会患上这两种疾病，这可能表明存在遗传风险。然而，没有其他肺气肿的致病基因已被证实，部分原因是缺乏定量措施的肺气肿在密集的基因分型的队列。多种族动脉粥样硬化研究（梅萨）和MESA家庭研究对6，814名年龄45-84岁无临床心血管疾病的参与者和595个家庭（2077名参与者）进行了心脏计算机断层扫描（CT）。MESA家族研究对亚临床动脉粥样硬化进行了连锁研究，两项研究将获得100万个SNP全基因组关联研究（GWAS）数据。MESA-Lung研究测量并验证了3，965名梅萨参与者心脏CT扫描肺部区域的定量肺气肿表型。然而，这个样本量足以检测GWAS显著性水平下的大关联。因此，我们建议对其他2，579名梅萨参与者和2，077名梅萨家族研究参与者的心脏CT扫描进行定量肺气肿表型测量。然后，我们将使用现有的全基因组连锁和GWAS数据，在595个非洲和西班牙血统的家庭和6,544名非洲，西班牙，欧洲或中国血统的参与者中进行统计遗传分析：1）MESA-家族研究中定量肺气肿表型的基于家族的连锁和GWAS，以及2）根据吸烟史分层前后梅萨队列中定量肺气肿表型的GWAS分析。本申请建议将来自梅萨、梅萨肺和梅萨家族研究的联合收割机数据结合起来，并添加选择性新数据，以在基于人群的队列和家族研究中的8，120名参与者中对肺气肿的遗传基础进行新颖的、高成本效益的研究。拟议的定量肺气肿表型研究是独特的，利用队列，而不是病例对照设计，包括非吸烟者，并招募少数民族群体，其中疾病的患病率上升最快。拟议的目标将研究基因组中DNA变异的作用和吸烟史的修饰，以识别风险变体，并为未来的功能和基因型/表型研究提供见解，这些研究将揭示疾病途径和治疗靶点。肺气肿将很快超过中风，成为美国第三大死亡原因，其中非洲裔美国人和亚洲人的增幅最大。治疗选择很少，部分原因是对其原因的了解有限。吸烟会导致某些类型的肺气肿，但大多数吸烟者不会患上肺气肿，这可能意味着遗传风险。这项研究建议在一项大型多种族队列和家庭研究（n= 8，120）中使用100万SNP全基因组和连锁数据来测量现有CT扫描的肺气肿，以检查肺气肿的遗传风险，这可能会导致更好地了解肺气肿的风险。