Methylation and mutations in RB1 and variants of synthetic folic acid metabolism

RB1 的甲基化和突变以及合成叶酸代谢的变异

• 批准号: 8976578
• 负责人: Manuela A Orjuela
• 金额: $ 66.69万
• 依托单位: COLUMBIA UNIVERSITY HEALTH SCIENCES
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-09-07 至 2018-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8976578
• 关键词: Adult; Affect; Age; Alleles; Biological; Biological Assay; Case Series; Cells; Child; Childhood; Colon Carcinoma; Colonic Adenoma; CpG Islands; Cytosine; DNA; Data; Deamination; Defect; Development; Diet; Dietary intake; Dihydrofolate Reductase; Disease; Environmental Exposure; Epidemiologic Studies; Evaluation; Fetal Development; First Pregnancy Trimester; Folic Acid; Food Supplements; Fortified Food; Frequencies; Genes; Genetic Polymorphism; Genetic Variation; Genotype; Glioblastoma; Handedness; Health Policy; Hereditary Retinoblastoma; Homozygote; Human; Hypermethylation; Incidence; Ingestion; Intake; Lead; Leukocytes; Lung; Malignant - descriptor; Malignant Childhood Neoplasm; Malignant Neoplasms; Malignant neoplasm of lung; Measures; Methylation; Mexico; Modeling; Mothers; Mus; Mutation; Newly Diagnosed; Nonsense Codon; Nutrient; Persons; Plasma; Predisposition; Pregnancy; Pregnancy Trimesters; Promoter Regions; Prospective Studies; Prostate; Public Health; RB1 gene; Retina; Retinal; Retinoblastoma; Retinoblastoma Protein; Risk; Sampling; Site; Testing; Variant; Woman; Work; base; carcinogenesis; cohort; disease-causing mutation; early childhood; epigenome; folic acid metabolism; high risk; in utero; lung small cell carcinoma; malignant breast neoplasm; neurodevelopment; outcome forecast; prenatal; promoter; public health relevance; pyrosequencing; response; tumor; tumor DNA; tumor progression

 DESCRIPTION (provided by applicant): Synthetic folic acid supplements are consumed by 50% of US adults. High folic acid intake can result in CpG island hypermethylation. Recent studies suggest high intake may contribute to carcinogenesis particularly in those persons unable to metabolize folic acid efficiently such as persons homozygous for the 19bp deletion polymorphism in the dihydrofolate reductase(DHFR) gene (rs70991108). Homozygotes (19% of US adults) have less efficient conversion of synthetic folic acid into biological folate. Women homozygous for the DHFR19bp deletion (DHFR19bpdel) are at increased risk for having a child with retinoblastoma, a neuro-ectodermally derived early childhood cancer that has served as a model for understanding carcinogenesis. This risk appears elevated among women homozygous for DHFR19bpdel who consumed folic acid containing prenatal supplements in the first trimester. In retinoblastoma, 37% of disease-causing mutations in the CpG-rich gene, RB1, are due to deamination of methylated cytosines in RB1, while an additional 12% are caused by methylation of the RB1 promoter. We hypothesize that these methylation related RB1-inactivating changes may be induced by less functional genetic variations in folate metabolism and excess exposure in early retinal development. Murine models suggest particular sensitivity to folic acid exposure in early neural development. In humans, periods of dietary inadequacy in early gestation are associated with hyper-methylation at meta- stable epialleles. Pilot data from mutation assays and methylation arrays from our ongoing case-series study of newly diagnosed retinoblastoma (mean age 23 months) in Central Mexico, EpiRbMx, suggest that women who have the less efficient DHFR 19bpdel and high folic acid prenatally have higher risk of a child with a methylation related RB1-inactivating mutation or differentially hyper-methylated RB1 promoter directly resulting in tumor formation. Maternal DHFR19bpdel homozygosity combined with high prenatal folic acid intake may lead to RB1 hyper-methylation in developmentally susceptible cells, thereby contributing to carcinogenesis. Based on the results of our pilot data, we propose to use existing samples and data from 337 cases in our ongoing EpiRbMx study (founded in 2003) including pre-treatment measures of mother and child plasma nutrients, diet intake, genotype, and tumors, to test our hypothesis of an association between maternal DHFR 19bpdel and prenatal folic acid exposure (using plasma and intake measures) and 1) methylation related RB1 mutations, specifically in somatic (non-germline) RB1 mutations, and 2) methylation of the RB1 promoter. We will further examine the impact of DHFR and prenatal folic acid exposure on differential methylation in metastable epialleles to document their effect on the developing epigenome. Given the high frequency of RB1 mutations among poor prognosis adult tumors such as small cell lung cancer(54%) or glioblastoma(11%) and the high proportion (19%) of adults with less efficient folic acid metabolism, the potential translational impact of our study is high, as our results can inform public health policy and evaluation of synthetic folic acid exposure.

 描述（由申请人提供）：50%的美国成年人食用合成叶酸补充剂。高叶酸摄入可导致CpG岛高甲基化。最近的研究表明，高摄入量可能有助于致癌，特别是在那些不能有效代谢叶酸的人中，例如二氢叶酸还原酶（DHFR）基因（rs70991108）中19bp缺失多态性纯合子的人。纯合子（19%的美国成年人）合成叶酸转化为生物叶酸的效率较低。DHFR19bp缺失（DHFR19bpdel）纯合子的女性生育视网膜母细胞瘤的风险增加，视网膜母细胞瘤是一种神经外胚层来源的早期儿童癌症，已成为了解致癌作用的模型。这种风险在DHFR19bpdel纯合子的妇女中出现升高，这些妇女在头三个月食用含有叶酸的产前补充剂。在视网膜母细胞瘤中，富含CpG的基因RB1中37%的致病突变是由于RB1中甲基化胞嘧啶的脱氨基，而另外12%是由RB1启动子的甲基化引起的。我们推测，这些甲基化相关的RB1失活的变化可能是由叶酸代谢中的功能性遗传变异和早期视网膜发育中的过度暴露引起的。小鼠模型表明在早期神经发育中对叶酸暴露特别敏感。在人类中，妊娠早期的饮食不足时期与Meta稳定表观等位基因的超甲基化相关。来自我们正在进行的墨西哥中部新诊断的视网膜母细胞瘤（平均年龄23个月）的病例系列研究EpiRbMx的突变测定和甲基化阵列的初步数据表明，产前DHFR 19 bpdel效率较低和叶酸水平较高的妇女，其子女具有甲基化相关的RB1失活突变或直接导致肿瘤形成的差异性超甲基化RB1启动子的风险较高。母体DHFR19bpdel纯合性结合产前高叶酸摄入可能导致发育易感细胞中RB1超甲基化，从而促进致癌作用。 基于我们的试点数据的结果，我们建议在我们正在进行的EpiRbMx研究中使用现有的样本和337例病例的数据。（成立于2003年），包括母亲和儿童血浆营养素，饮食摄入，基因型和肿瘤的治疗前措施，为了验证我们关于母亲DHFR 19 bpdel与产前叶酸暴露之间关联的假设，（使用血浆和摄入量测量）和1）甲基化相关的RB1突变，特别是体细胞（非生殖系）RB1突变，和2）RB1启动子的甲基化。我们将进一步研究DHFR和产前叶酸暴露对亚稳态表观等位基因差异甲基化的影响，以记录其在亚稳态表观等位基因中的作用。 影响发育中的表观基因组。鉴于RB1突变在预后不良的成人肿瘤（如小细胞肺癌（54%）或胶质母细胞瘤（11%））中的频率很高，以及叶酸代谢效率较低的成人比例很高（19%），我们研究的潜在转化影响很高，因为我们的结果可以为公共卫生政策和合成叶酸暴露的评估提供信息。