The Role of Viral and Cellular miRNAs in B-cell Lymphomagenesis

病毒和细胞 miRNA 在 B 细胞淋巴瘤发生中的作用

• 批准号: 9334358
• 负责人: Rebecca L Skalsky
• 金额: $ 24.9万
• 依托单位: OREGON HEALTH & SCIENCE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-09-01 至 2019-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9334358
• 关键词: AIDS-Related Diffuse Large B-cell Lymphoma; Acquired Immunodeficiency Syndrome; Acute; Address; Adult; Advisory Committees; Apoptosis; Apoptotic; Automobile Driving; Award; B Cell Proliferation; B lymphoid malignancy; B-Cell Activation; B-Cell Lymphomas; B-Cell Neoplasm; B-Lymphocytes; Binding; Bioinformatics; Biological; Biological Assay; Biological Models; Biology; Cancer Model; Cell Survival; Cells; Clinical; DNA Tumor Viruses; Data; Development; Epithelial; Epithelial Cells; Epstein-Barr Virus Infections; Event; Gene Expression; Gene Expression Regulation; Gene Targeting; Genes; Goals; Growth; Health; Hodgkin Disease; Homologous Gene; Human; Human Herpesvirus 4; Immunoprecipitation; In Vitro; Infection; Infectious Mononucleosis; LMP1; Laboratories; Lead; Learning; Libraries; Life; Life Cycle Stages; Link; Luciferases; Lymphoma; Lymphomagenesis; Lymphoproliferative Disorders; Malignant Neoplasms; Malignant lymphoid neoplasm; Mediating; Mentors; Messenger RNA; Methodology; MicroRNAs; Modeling; Molecular; Oncogenic; Outcome; Pathogenesis; Pathway interactions; Patients; Phase; Play; Population; Porifera; Primary Infection; Process; Regulation; Reporter; Resources; Ribonucleosides; Role; Sequence Homology; Signal Pathway; Signal Transduction; Staging; TNFRSF5 gene; Techniques; Time; Training; Viral; Viral Pathogenesis; Viral Proteins; Virus; Virus Diseases; Western Blotting; cell transformation; cellular targeting; computerized tools; crosslink; deep sequencing; differential expression; in vivo; infected B cell; inhibitor/antagonist; insight; large cell Diffuse non-Hodgkin' s lymphoma; latent infection; latent persistent infection; lymphoblastoid cell line; member; multidisciplinary; new therapeutic target; phenotypic data; programs; research study; transcriptome; transcriptome sequencing; tumorigenesis; uncontrolled B lymphocyte proliferation; viral RNA; virology

DESCRIPTION (provided by applicant): At least one in six human cancers is linked to viral infection. A portion of these can be attributed to Epstein-Barr virus (EBV), a ubiquitous DNA tumor virus associated with cancers such as Burkitt's, Hodgkin's, and diffuse large B cell lymphomas. During infection, EBV expresses viral microRNAs (miRNAs), and recent studies have demonstrated an important role for the EBV miRNAs as well as the cellular oncogenic miRNAs upregulated by EBV infection in the B cell transformation process. Furthermore, several EBV miRNAs share sequence homology with cellular miRNAs that are dysregulated in cancers and potentially, these viral miRNAs can tie into and alter existing miRNA-regulated networks. The miRNA targets involved in transformation are not yet defined, and thus, systemically identifying the genes regulated by miRNAs in EBV-infected cells is essential to understanding their contributions to viral oncogenesis and their roles during the EBV life cycle. Experiments outlined here combine state-of-the-art techniques from the multidisciplinary fields of miRNA biology, virology, and bioinformatics to comprehensively interrogate the miRNA targetome and examine the transcriptional landscape of EBV-infected B cells in order to extract critical genes and pathways influenced by viral and cellular miRNAs. These studies will be carried out using an EBV-driven in vitro B cell transformation model in addition to patient-derived EBV+ B cell tumors. To successfully carry out my studies, I require new training in both EBV biology and bioinformatics, and have accordingly assembled a scientific advisory committee to guide me in establishing and/or further developing several of the essential methodologies. The K99/R00 award will provide me both resources and time for new training during the mentored phase in order to learn fundamental de novo infection techniques and generate additional data and computational tools to be used in my own laboratory during the independent phase. By integrating the miRNA targetome data, transcriptome data, and phenotypic data generated through these experiments, I hope to elucidate the mechanisms by which miRNAs, particularly EBV miRNAs, contribute to persistent viral infection and the development of lymphoma. Finally, since EBV expresses not only viral miRNAs but further alters expression of oncogenic cellular miRNAs that have been linked to many cancers not associated with viral infection, these studies will potentially provide important information that can be extended to other cancer models and provide insight into the overall mechanisms governing miRNA-mediated gene regulation in cancers.

描述（由申请人提供）：至少六分之一的人类癌症与病毒感染有关。其中一部分可归因于EB病毒（EBV），一种与伯基特、霍奇金和弥漫性大B细胞淋巴瘤等癌症相关的普遍存在的DNA肿瘤病毒。在感染过程中，EBV表达病毒微小RNA（miRNA），并且最近的研究已经证明EBV miRNA以及由EBV感染上调的细胞致癌miRNA在B细胞转化过程中的重要作用。此外，几种EBV miRNA与在癌症中失调的细胞miRNA共享序列同源性，并且这些病毒miRNA可能结合并改变现有的miRNA调节网络。参与转化的miRNA靶点尚未确定，因此，系统地鉴定EBV感染细胞中miRNA调控的基因对于理解它们对病毒肿瘤发生的贡献及其在EBV生命周期中的作用至关重要。本文概述的实验联合收割机了来自miRNA生物学、病毒学和生物信息学多学科领域的最先进技术，以全面询问miRNA靶组并检查EBV感染的B细胞的转录景观，以提取受病毒和细胞miRNA影响的关键基因和途径。除了患者来源的EBV+ B细胞肿瘤外，还将使用EBV驱动的体外B细胞转化模型进行这些研究。为了成功地开展我的研究，我需要在EBV生物学和生物信息学方面进行新的培训，并相应地组建了一个科学咨询委员会，以指导我建立和/或进一步开发几种基本方法。K99/R 00奖将为我提供资源和时间，在指导阶段进行新的培训，以学习基本的从头感染技术，并生成额外的数据和计算工具，在独立阶段在我自己的实验室中使用。通过整合这些实验产生的miRNA靶组数据，转录组数据和表型数据，我希望阐明miRNA，特别是EBV miRNA，促进持续病毒感染和淋巴瘤发展的机制。最后，由于EBV不仅表达病毒miRNA，而且还改变了与许多与病毒感染无关的癌症相关的致癌细胞miRNA的表达，因此这些研究将可能提供重要的信息，这些信息可以扩展到其他癌症模型，并提供对癌症中miRNA介导的基因调控的整体机制的见解。