课题基金基金详情
应用基因本体和神经网络构建鼠-猪-人肌肉损伤时间推断研究体系
结题报告
批准号:
81971795
项目类别:
面上项目
资助金额:
56.0 万元
负责人:
孙俊红
依托单位:
学科分类:
法医病理学及法医临床学
结题年份:
2023
批准年份:
2019
项目状态:
已结题
项目参与者:
孙俊红
国基评审专家1V1指导 中标率高出同行96.8%
结合最新热点,提供专业选题建议
深度指导申报书撰写,确保创新可行
指导项目中标800+,快速提高中标率
客服二维码
微信扫码咨询
中文摘要
跨物种学习的基本理论是基于不同物种的细胞间有共同的编码机制,只是采用类似信号分子来传输对相同刺激做出的反应。基因本体论解决了跨物种生物数据库对基因产品一致性描述的需求,可以作为跨物种预测的桥梁。人体损伤时间推断是法医学重点问题,对确定死因及伤病关系分析至关重要,其难点在于不能进行人体实验,且动物研究成果又无法直接应用于人体。因此,本项目拟在前期利用大鼠损伤后mRNA时序性表达变化规律,建立数学模型进行损伤时间推断研究的基础上,进一步对大鼠、猪和人不同损伤时间、损伤程度骨骼肌挫伤组织进行高通量转录组测序,通过主成分分析、GO标签和pathway分析建立同源基因数据集,运用种间相关分析、深度信念网络和种间基因集富集分析等算法进行跨物种预测,并通过人体检材的测序数据验证算法的准确性和适用性。最终,构建“鼠-猪-人”损伤时间推断体系,为准确推断人体损伤时间提供科学支持。
英文摘要
The basic theory of cross-species prediction is that there is a common encoding mechanism shared by cells from different species, but distinct signaling molecules are only employed by different species to transmit the signals responding to the same environmental stimuli. Gene ontology addresses the need for consistent description of gene products in cross-species biological databases,so that it can be used as a bridge for cross-species prediction. Dating of wound in humans is an important aspect in forensic medicine. It is vital to determine the cause of death and analyze the relationship between injury and death. The biggest challenge in dating of wound is that not only the incapacity of in vivo experiments, but the inapplicability of animal research results transform to human body directly. Therefore, in this study, on the basis of an established mathematical model that was based on the changes in the temporal expression of mRNA after injury to estimate the wound age in rats, further the high-throughput transcriptome sequencing will be performed on skeletal muscle contusion tissues of rats, pigs and humans with different injury degree and different time periods. Gene data sets will be established through principal component analysis, GO tags and pathway analysis respectively. The interspecific genetic data sets correlation analysis, deep belief network and interspecific gene enrichment algorithms will be performed to do cross-species prediction in dating of wound, then the accuracy and the ability of applicability among these algorithms will be verified by the sequencing data of human physical examination materials. Above all the "rat-pig-human" dating of wound system will be constructed, and as a result, to enhance the accuracy of wound age estimation in human will provide scientific supports.
期刊论文列表
专著列表
科研奖励列表
会议论文列表
专利列表
DOI:10.1080/20961790.2021.1986770
发表时间:2022
期刊:FORENSIC SCIENCES RESEARCH
影响因子:1.3
作者:Du, Qiuxiang;Dong, Tana;Liu, Yuanxin;Zhu, Xiyan;Li, Na;Dang, Lihong;Cao, Jie;Jin, Qianqian;Sun, Junhong
通讯作者:Sun, Junhong
DOI:10.1016/j.heliyon.2023.e13617
发表时间:2023-03
期刊:HELIYON
影响因子:4
作者:Wang, Liangliang;Sun, Lele;Sun, Hao;Xing, Yunhong;Zhou, Shidong;An, Guoshuai;Li, Jian;Ren, Kang;Sun, Junhong
通讯作者:Sun, Junhong
DOI:10.1007/s00414-021-02690-0
发表时间:2021-09-13
期刊:INTERNATIONAL JOURNAL OF LEGAL MEDICINE
影响因子:2.1
作者:Du,Qiu-xiang;Wang,Liang;Sun,Jun-hong
通讯作者:Sun,Jun-hong
DOI:10.1016/j.fsigen.2022.102722
发表时间:2022-05
期刊:Forensic science international. Genetics
影响因子:--
作者:Kang Ren;Liangliang Wang;Yifei Wang;G. An;Q. Du;Jie Cao;Q. Jin;Keming Yun;Zhongyuan Guo-Zhongyuan
通讯作者:Kang Ren;Liangliang Wang;Yifei Wang;G. An;Q. Du;Jie Cao;Q. Jin;Keming Yun;Zhongyuan Guo-Zhongyuan
DOI:10.1016/j.fsigen.2023.102904
发表时间:2023-06-10
期刊:FORENSIC SCIENCE INTERNATIONAL-GENETICS
影响因子:3.1
作者:Li, Na;Liang, Xin-rui;Sun, Jun-hong
通讯作者:Sun, Jun-hong
基于高通量mRNA差异表达分析构建SEM-GC模型推断损伤时间的研究
  • 批准号:
    81571852
  • 项目类别:
    面上项目
  • 资助金额:
    60.0万元
  • 批准年份:
    2015
  • 负责人:
    孙俊红
  • 依托单位:
肌肉挫伤后组织中时间相关基因表达与损伤经历时间研究
  • 批准号:
    81001347
  • 项目类别:
    青年科学基金项目
  • 资助金额:
    20.0万元
  • 批准年份:
    2010
  • 负责人:
    孙俊红
  • 依托单位:
国内基金
海外基金