课题基金基金详情
分枝杆菌核糖体基因的成簇化及其同源基因替换的研究
结题报告
批准号:
31970049
项目类别:
面上项目
资助金额:
58.0 万元
负责人:
丁晓明
依托单位:
学科分类:
微生物生理与生化
结题年份:
2023
批准年份:
2019
项目状态:
已结题
项目参与者:
丁晓明
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中文摘要
随着多耐药和极度耐药结核分枝杆菌增多,亟待找到新的结核病治疗药物。核糖体作为多种抗生素的作用靶点,对它的功能研究具有重要意义。致病性结核分枝杆菌生长慢、培养条件严苛,常以生长快、非致病的耻垢分枝杆菌进行替代研究,但两者核糖体数量和密度、代谢多样性存在显著差异。核糖体与代谢调控、生长速度之间存在怎样内在的联系?为探索此问题,我们采用了合成生物学的研究策略:通过构建来学习。现已将结核分枝杆菌散布在染色体24个位点的核糖体基因拼接成簇,拟将其整合进耻垢分枝杆菌后,再通过内源基因的系统性敲除实现耻垢分枝杆菌核糖体的替换。在此过程中,探究核糖体基因拷贝数与生长速度、基因染色体排布与表达调控、核糖体异质与翻译调控之间的关系。该研究可能筛选出一批功能差异的分枝杆菌核糖体基因,还可能获得大部分或全部核糖体基因被结核分枝杆菌同源物替换的新底盘,为将来针对分枝杆菌的药物筛选和核糖体抗药机制研究奠定基础。
英文摘要
The emergence and spread of drug-resistant Mycobacterium tuberculosis, especially multidrug-resistant tuberculosis (MDR-TB) and extensively drug-resistant tuberculosis (XDR-TB) strains, is an important cause of the increased incidence of tuberculosis. Therefore, the discovery of new therapeutic drugs is an important research direction of current tuberculosis treatment. As a target of various antibiotics, it is of great significance for the functional study of mycobacterial ribosomes. Pathogenic M. tuberculosis grows slowly and culture conditions are harsh. It is often replaced by fast-growing, non-pathogenic Mycolicibacterium smegmatis in functional studies. However, there are significant differences in the number of ribosomes and metabolic diversity between these two species. Is there an intrinsic link between ribosome, metabolism, and growth rate? To explore such issues,we have adopted a strategy of synthetic biology:learning by building. We have assembled the ribosomal genes distributed in 24 locations of the M. tuberculosis genome into one gene cluster, and intend to integrate them into the chromosome of M. smegmatis, then carry out the systematic Knockout of endogenous ribosomes genes. By replacing the M. smegmatis ribosome genes, we will explore the relationship between ribosome gene copy number and growth rate, gene chromosome arrangement and express regulation, ribosome heterogeneity and translational regulation. Some functionally important ribosome genes may be identified by the mutants screening, and the study may lead to the construction of a series of M. smegmatis mutants in which most or all of the ribosomal genes have been replaced by M. tuberculosis orthologs. These mutants will be the new chassis for future drug screening or ribosome resistance studies.
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DOI:https://doi.org/10.3390/ijms242316767
发表时间:2023
期刊:Int J Mol Sci.
影响因子:--
作者:Zhipeng Huang;Arslan Habib;Guoping Zhao;Xiaoming Ding
通讯作者:Xiaoming Ding
DOI:10.1186/s12934-021-01578-3
发表时间:2021-04-21
期刊:Microbial cell factories
影响因子:6.4
作者:Wang H;Liang J;Yue Q;Li L;Shi Y;Chen G;Li YZ;Bian X;Zhang Y;Zhao G;Ding X
通讯作者:Ding X
DOI:10.1016/j.bej.2023.108878
发表时间:2023-02
期刊:Biochemical Engineering Journal
影响因子:3.9
作者:Huimin Wang;Yan Shi;Junheng Liang;G. Zhao;Xiaoming Ding
通讯作者:Huimin Wang;Yan Shi;Junheng Liang;G. Zhao;Xiaoming Ding
DOI:10.13345/j.cjb.210480
发表时间:2022-03
期刊:Sheng wu gong cheng xue bao = Chinese journal of biotechnology
影响因子:--
作者:Chan Shan;Q. Yue;Xiaoming Ding
通讯作者:Chan Shan;Q. Yue;Xiaoming Ding
Heterologous redox partners supporting the efficient catalysis of epothilone B biosynthesis by EpoK inSchlegelella brevitalea
异源氧化还原伙伴支持 EpoK 在 Schlegelella brevitalea 中有效催化埃博霉素 B 生物合成。
DOI:10.1186/s12934-020-01439-5
发表时间:2020-09-15
期刊:MICROBIAL CELL FACTORIES
影响因子:6.4
作者:Liang, Junheng;Wang, Huimin;Ding, Xiaoming
通讯作者:Ding, Xiaoming
链霉菌噬菌体和cosmid的体外包装
  • 批准号:
    30600009
  • 项目类别:
    青年科学基金项目
  • 资助金额:
    20.0万元
  • 批准年份:
    2006
  • 负责人:
    丁晓明
  • 依托单位:
国内基金
海外基金