CC* Networking Infrastructure: A Science DMZ For Quantitative Biology and Precision Agriculture
CC* Networking Infrastructure: A Science DMZ For Quantitative Biology and Precision Agriculture
批准号:
2018432
负责人:
Brian O'Shea
金额:
$48.31万
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2020
资助国家:
美国
项目状态:
已结题
起止时间:
2020-07-01 至 2022-06-30
中文摘要
摩尔定律开启了一场科学数据革命。这在生命科学中尤为突出,用于收集数据的设备和用于生成模型的理论工具大大受益于廉价数字传感器和通用图形处理单元的出现,这些设备和工具导致高质量数据量的爆炸性增长。共享大量数据以供其他研究人员分析将为科学界带来巨大好处。该项目在密歇根州立大学创建了一个科学非军事区,这将促进密歇根州立大学的研究人员能够以非常高的带宽与外部研究社区共享大量数据。该项目支持实现高达100Gbps的网络连接所需的网络硬件和软件,用于共享已经存储在MSU的高性能计算系统和NSF资助的MI-OSIRIS文件系统上的数据。该项目使用校园内四个研究小组提供的数据作为试验台,制作冷冻电子显微镜图像、使用无人机对作物进行高光谱成像、通过X射线计算机断层扫描生成植物的三维体积图像,以及向其他研究人员和公众提供生物分子模拟数据的数据库。该项目加强了密歇根州立大学科学家的影响力,并利用了美国国家科学基金会先前的科学和网络基础设施投资。此外,它还涉及学生参与科学非军事区的部署和使用。该奖项反映了NSF的法定使命,并通过使用基金会的智力优势和更广泛的影响审查标准进行评估,被认为值得支持。
英文摘要
Moore’s Law has ushered in a scientific data revolution. This is particularly acute in the life sciences, where the devices used to collect data and the theoretical tools used to generate models have benefited tremendously from the advent of inexpensive digital sensors and general-purpose graphics processing units, which have led to an explosive increase in the volume of high-quality data. Sharing large amounts of this data for analysis by other researchers will result in tremendous benefits to the scientific community.This project creates a Science DMZ at Michigan State University, which will facilitate MSU researchers’ ability to share huge volumes of data with the external research community at very high bandwidth. The project supports the networking hardware and software necessary to implement up to 100Gbps network connections used for sharing data already stored at MSU’s High Performance Computing System and on the NSF-funded MI-OSIRIS file system. The project uses data provided by four research groups on campus as a testbed, making cryo-electron microscopy images, hyperspectral imaging of crops using drones, three-dimensional volumetric images of plants generated via X-ray computed tomography, and a databank of biomolecular simulation data available to other researchers and the public. This project enhances the impact of MSU scientists and leverages prior NSF scientific and cyberinfrastructure investments. In addition, it involves the participation of students in the deployment and usage of the science DMZ.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
期刊论文(2)
专著(0)
科研奖励(0)
会议论文
DOI:
10.1093/insilicoplants/diab033
发表时间:
2022-01-01
期刊:
IN SILICO PLANTS
影响因子:
3.1
作者:
[Amezquita, Erik J., Quigley, Michelle Y., Chitwood, Daniel H.]
通讯作者:
Chitwood, Daniel H.
CC* Compute: The MSU Data Machine - a high-memory, GPU-enabled compute cluster for data-intensive and AI applications
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批准号:2200792
-
项目类别:Standard Grant
-
资助金额:$39.99万
-
财政年份:2022
-
负责人:Brian O'Shea
-
依托单位:
REU Site: iCER ACRES: iCER Advanced Computational Research Experience for Students
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批准号:1949912
-
项目类别:Standard Grant
-
资助金额:$40.12万
-
财政年份:2020
-
负责人:Brian O'Shea
-
依托单位:
Travel grant for LRAC proposal AST20004: The role of low collisionality in compressible, magnetized turbulence
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批准号:2031219
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项目类别:Standard Grant
-
资助金额:$0.95万
-
财政年份:2020
-
负责人:Brian O'Shea
-
依托单位:
Collaborative Research: The Spatially Resolved Circumgalactic Medium of Galaxies
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批准号:1908109
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项目类别:Standard Grant
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资助金额:$24.23万
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财政年份:2019
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负责人:Brian O'Shea
-
依托单位:
Probing the Fossils of the Local Group using Petascale Adaptive Mesh Galaxy Simulations
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批准号:1810584
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项目类别:Standard Grant
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资助金额:$1.4万
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财政年份:2018
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负责人:Brian O'Shea
-
依托单位:
Collaborative Research:Framework:Software:NSCI:Enzo for the Exascale Era (Enzo-E)
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批准号:1835426
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项目类别:Standard Grant
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资助金额:$48.01万
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财政年份:2018
-
负责人:Brian O'Shea
-
依托单位:
Collaborative research: Multiscale physics and feedback in real and simulated circumgalactic gas over cosmic time
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批准号:1514700
-
项目类别:Continuing Grant
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资助金额:$23.43万
-
财政年份:2015
-
负责人:Brian O'Shea
-
依托单位:
Petascale Adaptive Mesh Simulations of Milky Way-type Galaxies and Their Environments
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批准号:1514580
-
项目类别:Standard Grant
-
资助金额:$3.15万
-
财政年份:2015
-
负责人:Brian O'Shea
-
依托单位:
Annual National Science Foundation Astronomy and Astrophysics Postdoctoral Fellows Symposium
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批准号:1612964
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项目类别:Standard Grant
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资助金额:$2.62万
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财政年份:2015
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负责人:Brian O'Shea
-
依托单位:
Collaborative Research: Software Institute for Abstractions and Methodologies for HPC Simulation Codes on Future Architectures
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批准号:1228667
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项目类别:Standard Grant
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资助金额:$0.92万
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财政年份:2012
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负责人:Brian O'Shea
-
依托单位:
Formation of the First Galaxies: Predictions for the Next Generation of Observatories
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批准号:0832662
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项目类别:Standard Grant
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资助金额:$4.0万
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财政年份:2009
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负责人:Brian O'Shea
-
依托单位:
海外基金