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New Development of Kramers-Fokker-Planck Equation of Polyatomic Molecules

New Development of Kramers-Fokker-Planck Equation of Polyatomic Molecules
多原子分子Kramers-Fokker-Planck方程的新进展
批准号:
20550011
负责人:
NAGAOKA Masataka
金额:
$3.16万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2008
资助国家:
日本
项目状态:
已结题
起止时间:
2008 至 2010

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中文摘要
翻译
如何认识凝聚态系统的动力学?我们试图从HF分子到其周围的水溶剂体系的能量弛豫过程的观点来理解它的特性,由于凝聚体系中的动力学应该在随机理论的基础上考虑,所以观测量必须进行统计计算。因此,我们建立了超多并发分子动力学模拟系统,并利用该系统对HF分子的能量弛豫过程进行了模拟,发现HF分子周围的溶剂化水分子需要其内部的振动模式进行能量传递。这种能量传递途径依赖于HF分子激发模式的振动矢量。结合Kramers-Fokker-Planck方程模型,研究了分子动力学的坐标系选择问题。我们认为,应引入与分子涨落相对应的观测量时标。结果发现,该特性适当地依赖于时间窗口的大小。
英文摘要
How is the dynamics in condensed system recognized? We tried to understand its characteristics from the viewpoint of energy relaxation processes from an HF molecule to its surrounding water solvent system.Since the dynamics in condensed system should be considered on the basis of stochastic theory, observables must be statistically calculated. Therefore, the super-multi concurrent molecular dynamics simulation system was developed.From those simulations of energy relaxation process using the system involved, it is found that solvated water molecules around the vibrationally excited HF molecule requires their internal vibrational modes for energy transfer. Such energy transfer pathway depends on vibrational vector of excitation mode of the HF molecule. It is concluded that intra-molecular vibrational couplings are dominant on the energy relaxation process.In relation to the Kramers-Fokker-Planck equation modeled condensed systems, furthermore, it was investigated to select which coordinates systems could represent molecular dynamics. We considered that time scales of observables should be introduced in correspondence with molecular fluctuation. It was found that the characteristics depend properly on the time window size.
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A Minimal Implementation of the AMBER-GAUSSIAN Interface for Ab Initio QM/MM-MD Simulation
用于 Ab Initio QM/MM-MD 仿真的 AMBER-GAUSSIAN 接口的最小实现
DOI: --
发表时间: 2010
期刊: Journal of Computational Chemistry
影响因子: 3
作者: [T.Okamoto, K.Yamada, Y.Koyano, T.Asada, N.Koga, M.Nagaoka]
通讯作者: M.Nagaoka
Anisotropic Relaxation Pathway of Excess Energy of Photolyzed MbCO by Perturbation Ensemble Method
微扰系综法光解MbCO过剩能量的各向异性弛豫路径
DOI: --
发表时间: 2010
期刊:
影响因子: --
作者: [高柳昌芳, 長岡正隆]
通讯作者: 長岡正隆
Ab initio QM/MM-MD法による水溶液中グリシン配座異性体の自由エネルギー的安定性
通过从头算 QM/MM-MD 方法测定水溶液中甘氨酸构象的自由能稳定性
DOI: --
发表时间: 2010
期刊:
影响因子: --
作者: [北村勇吉, 竹中規雄, 長岡正隆]
通讯作者: 長岡正隆
自由エネルギー面上での水溶液中グリシンの分子内プロトン移動の反応経路探索
水溶液中甘氨酸自由能表面分子内质子转移的反应路线探索
DOI: --
发表时间: 2010
期刊:
影响因子: --
作者: [竹中規雄, 小谷野哲之, 北村勇吉, 麻田俊雄, 長岡正隆]
通讯作者: 長岡正隆
共 67 条
    Challenge to porous polymeric membrane synthesis by micro simulation
    • 批准号:
      24654137
    • 项目类别:
      Grant-in-Aid for Challenging Exploratory Research
    • 资助金额:
      $2.41万
    • 财政年份:
      2012
    • 负责人:
      NAGAOKA Masataka
    • 依托单位:
    Theoretical Study on Realization of Nonequilibrium Reaction Field Analogs by Unique Aggregated Coordination Space
    • 批准号:
      16074207
    • 项目类别:
      Grant-in-Aid for Scientific Research on Priority Areas
    • 资助金额:
      $7.1万
    • 财政年份:
      2004
    • 负责人:
      NAGAOKA Masataka
    • 依托单位:
    New Development of Reaction Dynamics Theory based on the Free Energy Gradient Method
    • 批准号:
      15350010
    • 项目类别:
      Grant-in-Aid for Scientific Research (B)
    • 资助金额:
      $9.09万
    • 财政年份:
      2003
    • 负责人:
      NAGAOKA Masataka
    • 依托单位:
    MOLECULAR DYNAMICS STUDY ON REAGENT DENSITY DEPENDENCE AND TEMPERATURE-PRESSURE EFFECT IN SOLUTION CHEMICAL REACTIONS
    • 批准号:
      13440176
    • 项目类别:
      Grant-in-Aid for Scientific Research (B)
    • 资助金额:
      $0.58万
    • 财政年份:
      2001
    • 负责人:
      NAGAOKA Masataka
    • 依托单位:
    海外基金