Investigation of the reaction mechanism of orotidine monophosphate decarboxylase using the distortion of the substrate
Investigation of the reaction mechanism of orotidine monophosphate decarboxylase using the distortion of the substrate
批准号:
22770102
负责人:
FUJIHASHI Masahiro
金额:
$2.75万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Young Scientists (B)
财政年份:
2010
资助国家:
日本
项目状态:
已结题
起止时间:
2010 至 2011
中文摘要
Orotidine 5'-单磷酸脱羧酶(ODCase)将Orotidine 5'-单磷酸(OMP)脱羧为尿苷5'-单磷酸(UMP)的速度提高了17个量级。我们已经确定了几种配体类似物的晶体结构,并对酶的短寿命中间体进行了计算机模拟。结果表明,ODCase同时利用基态不稳定和过渡态稳定催化脱羧反应。
英文摘要
Orotidine 5'-monophosphate decarboxylase(ODCase) accelerates the decarboxylation of orotidine 5'-monophosphate(OMP) to uridine 5'-monophosphate(UMP) by 17 orders of magnitude. We have determined several crystal structures with ligand analogues and performed computer simulations of the enzyme's short-lived intermediates. The results show that ODCase catalyzes the decarboxylation reaction utilizing both ground state destabilization and transition state stabilization.
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会议论文
Elucidation of catalytic mechanism of two characteristic enzymes and its application based on crystal structures.
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批准号:24570130
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$3.49万
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财政年份:2012
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负责人:FUJIHASHI Masahiro
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依托单位:
Investigation of the structural change of orotidine 5'-monophosphate decarboxylase during the reaction and its catalytic mechanism
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批准号:20770081
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项目类别:Grant-in-Aid for Young Scientists (B)
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资助金额:$2.83万
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财政年份:2008
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负责人:FUJIHASHI Masahiro
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依托单位:
海外基金